Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3053 104 2e-17 >seq3053 Length=25279 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | || |||||||||||||||||| | || || ||||| || || ||||| Sbjct 10154 CTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAA 10095 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 ||| | || |||||||| | || | || ||||| || ||| ||| |||| || Sbjct 10094 AATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACAT 10036 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | |||||| || ||||| |||| || || || || || || || ||||| | Sbjct 10035 TCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTA 9976 Query 43097 CAAAAATTTGCATTTT 43112 |||| || |||||||| Sbjct 9975 CAAAGATCTGCATTTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381215446355628