Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15048 560 1e-154 >seq15048 Length=4365 Score = 560 bits (620), Expect = 1e-154 Identities = 1266/1895 (67%), Gaps = 29/1895 (2%) Strand=Plus/Plus Query 70780 TTTATTTTTTCCTT-GTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAG 70838 |||||| || | || ||| | || || ||||||| | | ||| | ||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 || ||||| || ||||||||||| |||| | | ||||| || |||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 ||| | || || | | |||||||| | ||||| ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 71018 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 71019 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAA 71074 || | || | | || ||| | || |||| |||||||| |||| | || | Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTA 1568 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 | ||||| || | ||||| ||| || | | ||||||| | |||| || | ||| Sbjct 1569 TTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGAT 1628 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 | ||||| ||||||||||| || |||||||||| || ||||||||||| ||||||| Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACG 1688 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 |||| | || || |||||||||||||| || || || ||||| || ||||| ||||||| Sbjct 1689 GTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCA 1748 Query 71255 CCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCC 71314 | | |||| || || | ||||| | ||||||| ||||| | ||||| || Sbjct 1749 CAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCC 1808 Query 71315 AAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATG 71374 | | || | || || || || || || || Sbjct 1809 ACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGAC 1868 Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 ||| ||||||| || |||||||| |||||| || || |||||||| ||||| |||| Sbjct 1869 TTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATG 1928 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||| ||||||| ||||| || || | |||||| | | || | | || ||| Sbjct 1929 CGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCAT 1988 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 | || || | | | |||||| ||||| || | |||||||| |||||||| ||||||| Sbjct 1989 AAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTC 2048 Query 71555 TGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 71614 | |||| | ||| || ||| ||||| || | ||||||||||| | ||| || |||| Sbjct 2049 TATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTT 2108 Query 71615 TATTGAGATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-- 71669 |||| | ||| || |||||| | ||||| || |||| ||| ||| ||||| Sbjct 2109 TATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAGA 2165 Query 71670 -TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCT 71728 | | | || | ||||||| || || |||| || || || || |||||||||| || Sbjct 2166 CTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCT 2225 Query 71729 CATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 ||| | | | ||||| | ||||||||| || |||||||| || || || || || | Sbjct 2226 CATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGA 2285 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 |||||||| || || ||| | || || | ||| || || || ||| | || ||||| | Sbjct 2286 GGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTG 2345 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTA---TTATATTC 71904 |||| | || | ||||||||||| ||| | | ||| | || |||| || ||||| Sbjct 2346 TTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG-GCTTTTACTTTTCTATTC 2404 Query 71905 TTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA 71964 | || || || | || |||| | ||| || || || || |||||| | Sbjct 2405 GCGCGTCCCTCTT---TCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACT 2461 Query 71965 TTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACT 72024 | | || |||||||| | | || ||||| | ||||| ||| | | | | | ||| Sbjct 2462 TCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACT 2521 Query 72025 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 72084 ||||||||||| | ||| |||||||| | ||| ||||| ||| | | |||||| || Sbjct 2522 CGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCT 2581 Query 72085 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 72144 || || || || || || || | ||| | ||| | | ||||||||| ||||| || || Sbjct 2582 TCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCT 2641 Query 72145 AAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 72204 ||||| || || | | |||| |||| ||| ||||| || || | ||| | || Sbjct 2642 AAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACA 2701 Query 72205 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 72264 || || ||||||| | |||||| | | || || || | ||||| || || || ||| Sbjct 2702 TTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATA 2761 Query 72265 TAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | | || | || || || | || ||| || || || || || || ||||| Sbjct 2762 GATGTGCCTTTAGCTCGTATGCAATGAACATTTATT--CCAATACCTCCAGCTGATTTAG 2819 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 | || | |||||| ||| | | | | | || || || || ||| | | ||| Sbjct 2820 ATATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTG 2879 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 ||||||| || || || | ||| | ||| | ||| | ||| ||| | || || | Sbjct 2880 TAAGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTG 2939 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATA 72501 | || |||||||| || |||| ||||| ||| ||||| || ||||| || || |||||| Sbjct 2940 ATGCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATA 2998 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 || ||| || |||| | || | ||| ||||| ||||||||||||||| |||| Sbjct 2999 TCATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATT 3058 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621 ||| || |||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3059 TTGCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAG 3118 Query 72622 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || || ||| | || || || Sbjct 3119 CCAAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670860962466160