Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq15048 170 2e-37 >seq15048 Length=4365 Score = 170 bits (188), Expect = 2e-37 Identities = 728/1130 (64%), Gaps = 54/1130 (5%) Strand=Plus/Plus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT--ACTGTGAAA 156549 |||| || |||||||||||||||||||| || || | | | | ||| || || | | Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGAC-GT-ATA 1686 Query 156550 CGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGC 156609 ||||||||| || ||||| || | || || ||||| | || || ||||| || Sbjct 1687 CGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGC 1746 Query 156610 CACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTC 156669 |||||| | || || | || || ||||| | ||| || |||| || | ||| || Sbjct 1747 CACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATC 1806 Query 156670 CCATAACGAAGTCGGTACCGTATTCC--ACAAATCGTATTGCAATATTCCTTCGCTCGCT 156727 ||| || || || || ||| ||| ||| || |||| |||||| | ||| | Sbjct 1807 CCACAAATTTGTAGGAGT--TACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACG 1864 Query 156728 TTGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCG 156787 || ||| || | || ||| || || |||||| || |||| ||||| Sbjct 1865 GGACTTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCC 1924 Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847 | || || ||| | |||||| ||||| |||||||| |||| || || || Sbjct 1925 AATGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTT 1984 Query 156848 ACGTACGG-TATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGAT 156906 | || || ||| | || | || ||| || ||||||| ||||||| ||||| || || Sbjct 1985 TCATAAGGGTAT-CTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAAT 2043 Query 156907 GGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAGGGTAGAAATTGCGAT 156962 || | ||| |||| ||| ||||||||||| ||| ||| || || |||| || Sbjct 2044 AGGTCTATGTCGCAAATTCGATTTTTTTGC---TTCGGGTAAT-GGATAATAATTTACAT 2099 Query 156963 CAATAATTTTATTCAAACTATCC---ACTACATGTTTGACCACAGTGTGCAATAGTTGAA 157019 |||| |||||||| ||| | | |||| | | ||||| | | ||| || || Sbjct 2100 CAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTT---AATTTTTTAA 2156 Query 157020 AATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATA 157076 | ||||| |||| | | | | |||| | |||||||| || || || || | Sbjct 2157 AGTCAAAGACTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAA 2216 Query 157077 CGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTA 157136 |||| | || || || || |||||| || ||||| | ||| | ||| |||||||||| Sbjct 2217 CGGCTATCTCATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTA 2276 Query 157137 TCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACG 157196 | ||| || ||| |||||||| | ||||| | || ||||||| ||| || | Sbjct 2277 TAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATG 2336 Query 157197 GTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTT 157256 | || || ||||| |||| ||||| || || | || | || | ||| ||| Sbjct 2337 GGGTACCTGTTTCCACTTGTGCCTCTATAATC--GCAAACCAAAGGGACTG--GGCTTTT 2392 Query 157257 GCT--------CGCGAAACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTC 157308 || |||| | ||| | || || || | || ||| || ||||| || Sbjct 2393 ACTTTTCTATTCGCGCGTC---CCTCTTTC-TCATATTTTTCATACAAGGTCTCAAATTC 2448 Query 157309 --ATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATA 157366 | | ||| || | | ||| |||||||| || ||| ||||| | ||||| Sbjct 2449 CGAACCCCAAACTTCATGCA-AGCC-AGGACACTTGTGAGGGCACATAAGGGACCAATCT 2506 Query 157367 CCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCA 157426 |||| ||||||| ||||||||||| | |||||||| ||| ||||| | | |||||| Sbjct 2507 TCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCA 2566 Query 157427 CGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCG 157486 || ||| | ||||| |||| ||||| | | |||| || | ||| || Sbjct 2567 CGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCA 2626 Query 157487 CAATGCCACGGTTCAACGTACACTGCTTGGGCT-----CCTTTTCGCTTGCCACCTTGAT 157541 | ||||| || || | ||| | ||| ||| |||||| | ||| ||||| | Sbjct 2627 GAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCC--GCCTCCTTGGT 2684 Query 157542 CCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCG 157591 | |||| || ||| ||| || ||||||| |||||||| | ||| ||| Sbjct 2685 CAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCG 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506804204505120