Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7146 269 4e-67 seq21977 127 3e-24 seq5578 109 8e-19 seq15048 93.3 6e-14 >seq7146 Length=6253 Score = 269 bits (298), Expect = 4e-67 Identities = 444/635 (70%), Gaps = 19/635 (3%) Strand=Plus/Plus Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 || || |||||| | |||||||||| |||| ||||||||| || |||||||| |||||| Sbjct 5310 TTCATTTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTG 5369 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAA 125249 || || ||| |||||| || | |||||| | ||||| ||||| ||||| Sbjct 5370 GTGGAGCGTTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCAG 5429 Query 125250 ATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGC 125309 ||| || ||||| || |||||||| |||||| | |||||||||| ||||| | Sbjct 5430 ATCGCCATGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAGG 5489 Query 125310 GATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||||||| | || | || || || || |||| || ||||| | | || Sbjct 5490 GATCCGCATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAAG 5549 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATC-----GATGACGACAAGTCTTCGTACGCCGACA 125424 ||||| | |||| ||| |||||| || | || | | ||||| || || Sbjct 5550 AAGGCCGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAA-CTTCGGTGAGCG-CA 5607 Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 | | || ||||||||||| |||||||| ||||| ||||| ||||| || | |||| Sbjct 5608 ---TCATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCT 5664 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTC 125544 | ||||| ||||||||||| ||||||||||| || || | |||||||| || || | Sbjct 5665 TCTGGCTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCAC 5724 Query 125545 GAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG 125604 | ||||||||||| || ||||| || ||| || |||| | | ||||| || | | Sbjct 5725 GCGACGAGGGCCTGCATTGTGATTTCGCCTGCCTGATGTT---CCAGCATCTG-GTGCAG 5780 Query 125605 AGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAAC 125664 || ||||| ||| ||||| | || | ||| || |||| ||| |||| Sbjct 5781 CGT-----CCCAGCCGCGAACGCATCATCGAGATCATCGACGAAGCGGTGAAGATCGAAC 5835 Query 125665 AAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGT 125724 | ||||| || |||||| | || ||||||| |||| |||||||||||||| || |||| Sbjct 5836 AGGAGTTCCTCACCGAAGCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACTGATGT 5895 Query 125725 GCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 ||||||||| || || ||||| || ||||| ||| Sbjct 5896 CCGAGTACATCGAATTCGTGGCCGACCGTCTGCTG 5930 >seq21977 Length=3599 Score = 127 bits (140), Expect = 3e-24 Identities = 518/823 (63%), Gaps = 60/823 (7%) Strand=Plus/Plus Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783 || || || |||| ||| || || || | | |||||| || | || ||| |||| Sbjct 2776 CCGCGTGTGGTCAGCGCCGGGGTGCCCAAACGAATGCCGGACGGATTCAGGGCGGACTTG 2835 Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843 || ||||| || ||||| |||||||| ||||| | | ||||||||| || || Sbjct 2836 TCACCGGGCACGGTGTTCTTGTTGCAGGCGATGTTCACCTCCTCGAGGATGTATTCGGCA 2895 Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903 | ||||| | || ||||| |||||| |||| | | || ||| | ||||| ||| Sbjct 2896 CGGGCTCCGGTCAGGCCCACCGAGCGCAAGTCCAGCAACACCAAATGGATGTCGGTGCCG 2955 Query 126904 CCAGTGGTGACGGTGTAGCC--TCGTGAAACGAGTCCCTCTGCCAA-CAACTGTGCATTT 126960 || |||| ||| ||||||| || ||| ||| ||||| || | || | ||||| Sbjct 2956 CCGGTGGCCACGCTGTAGCCCTTCTTGAT--GAGGCCCTCGCACAGGCGAC-GCGCATTC 3012 Query 126961 CGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTG 127020 || ||| | | |||||| || || || | || | ||||| | ||| || ||| Sbjct 3013 GCCATCACCTGCTTCTGGTAGGCGGCGAATTCGGGGGTCTTCGCCTGCTTCATGGCCGTG 3072 Query 127021 GCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGT 127080 || || | || || |||| |||||||| || || ||||| || |||||||| | Sbjct 3073 GCAATGCCGGCGATGGTGTTGTTGTGCGGCCCCCCCTGCAGCGACGGGAACACGGCCCCG 3132 Query 127081 TCAATTTCCTGCTCTAG-----------------------------TGATTT-------- 127103 | ||| | ||| || || ||| Sbjct 3133 TTAATGCGATCCTCCAGGTCGTACATGACTTTGTCGCCGTTCGGCTTGGTTTTGCGCAAG 3192 Query 127104 -----GCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTG 127158 |||| | ||||| || ||||| || ||||| | | ||||||||||| || ||| Sbjct 3193 CCCTTGCGGAAGAAGATCACACCGGCACGGGGACCGCGCAACGTCTTGTGCGTGGTGGTG 3252 Query 127159 GTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA 127218 | || | ||| || || ||||| || |||| | || | || ||| || Sbjct 3253 CTGACGACGTCGGCGTATTCGAAGGGCGACGGTATGAGGCCGGGGGCCACCATGCCGGCG 3312 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 || || || |||||||| | ||| ||| | || | ||| |||| ||||| || Sbjct 3313 ATATGCGCCATATCGGCAAACAGGTAGGCGTCGTTCTCGTCGCAGATCTTGCGGAAGCGG 3372 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 |||||| | || || | |||||| |||||| ||||| | | || ||||| Sbjct 3373 GCATAGTCGAGGCAGCGCGAATAGCACGACACGCCGGCAATGATCATTTTCGGCTTGAAC 3432 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || ||| ||| | || || | ||||||| ||| || | || || ||||||||| Sbjct 3433 AGGCGGGCGTTCTTCTCCAGGGTGTCGTAGTCGATGAGGCCCGACTTGGGGTCCACCTTG 3492 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACG---TTG---------CGGAAT 127446 || | |||||| ||||| |||| || || ||||| | | ||| ||| Sbjct 3493 TAGGCCATGCTCTCGAAGAAGATGGACGTGGCGGAGATGCGCTTGGTCTGGGTCATGAAG 3552 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGA 127489 |||||||||| ||| || || ||||||||||| || ||||||| Sbjct 3553 CCGTGCGTCAAGTGACCGCCATCGGGCAGATCCAGGCCCATGA 3595 >seq5578 Length=9165 Score = 109 bits (120), Expect = 8e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 |||||| | ||||| | ||||||||||| || | || || ||||||||||||||| Sbjct 3001 TGGCCCCTCGAGTACGTCATCTACACGGCCACCCTGCCCTCCGCCCTCACCGGAGCCGAT 3060 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || |||| ||||| ||||||| |||||||| | || |||||||| || || ||| Sbjct 3061 GTGGCCATCTTCGCCTCGTGCTTCGCCTACATATCGGACGTGTCGACGCTGCGCAACCGC 3120 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | || || ||| |||| | |||||||||| | ||||| || || |||||| Sbjct 3121 ACAATGCGGGTCACCATACTGGACGTGTGCTACCTGAGCGCTATGCCCACGGGCGTGGCG 3180 Query 50315 ATCGG 50319 |||| Sbjct 3181 CTCGG 3185 >seq15048 Length=4365 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CACGATACGTTACACAGGGCG 96882 ||||| ||||||||||| ||| | | ||| |||||| | || |||||| || || | Sbjct 2733 GGCCTGGTGCCAATGCTAAGAGTTTTCAA--CAATGTGGCCCGCTACGTTGACCAAGGAG 2676 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 || ||| |||| || ||| | || ||||||| || ||||||||| | || |||||| Sbjct 2675 GCGGAAAAAGGCCTGGAGCTTTTGCAATCTACTTAGAGCCTTGGCACTCTGATATTTTTG 2616 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | ||| | || | |||||| | ||| ||||| |||| | || || |||| Sbjct 2615 AGTTTTTGGATTTAAAGAAAAACACGGGCAAGGAAGAACATAGAGCTCGTGATTTATTTT 2556 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 |||| | ||| | || |||||||| ||||| || || Sbjct 2555 ATGCTTTGTGGATTCCCGATTTGTTTATGAAACGAGT 2519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740751975382160