Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq23044 232 2e-56 seq26734 138 3e-28 >seq23044 Length=7840 Score = 232 bits (256), Expect = 2e-56 Identities = 364/517 (70%), Gaps = 8/517 (2%) Strand=Plus/Plus Query 187 GTTATGTGGGAACTGACCACCAAAGAATTGTGTGGTCAGGGACTGCTGTGTGTTACGGAT 246 || |||||||| || || | |||||| | ||||| ||||| | | ||| |||| || Sbjct 582 GTCATGTGGGAGCTCACGATAAAAGAACTCTGTGGACAGGGTATTTTATGTATTACCGAC 641 Query 247 TTGGCTGTACTGGAGCGCTGGTGTGTCGCCTACGAGTTCTGGCGGAGAGCAGTAAAAAAT 306 | ||||| || |||||||||||||| ||||| | | ||||| | ||||| | || Sbjct 642 CTCGCTGTGCTTGAGCGCTGGTGTGTGGCCTATCATATTTGGCGTAATGCAGTCATTGAT 701 Query 307 ATCGCAAAAGAAGGTAACAC-CATAACTGGCGCTATgggggggAAAATAAAGAACCCTGA 365 ||| ||| || ||| | | ||| ||| || | ||| || |||||| |||||||| Sbjct 702 ATCATGCGAGACGG-AACTCGCTTAATTGGTGCAACGGGTGGCCCAATAAAAAACCCTGA 760 Query 366 ACTTACTGCCAAGAAAGAACAGGAATCGGAGATGAGTTCTACTGGTTCTATGCTGGGCCT 425 | || | || ||||| || ||| || ||| | |||||| | ||| |||| | Sbjct 761 CTTAACGACAAAAAAAGAGCAAGAAAGCGAAATGGATCGTACTGGCGCAATGTTGGGTTT 820 Query 426 TGACCCCAGTAGTCGACAGCGCCTTATTGGTCTGGCCGGACAGAAGAAAACATCTAACCC 485 || || || ||||| ||||| | ||||| |||| || || |||||| | ||| || Sbjct 821 AGATCCGAGCAGTCGCCAGCGGTTAATTGGCATGGCAGGGCAAAAGAAACAAGATAATCC 880 Query 486 ATTCCTGAAGATGATCAACTCATGAGCCGGAAATCATATCCCAACGTTAACGCCGCTAAT 545 ||| ||| ||| || |||||||||| ||||| || || ||||| || | || ||| Sbjct 881 ATTTATGAGGATCATTTCATCATGAGCCGTAAATCTTACCCAAACGTCAATGTGGCAAAT 940 Query 546 CAGTATGCCCGCAACGTTGTGCGGGGAAAAATCACGGCATGTCAGTATGTCATTCAGGCC 605 || ||||| || | || || || || || | || ||||||||||||||| | || Sbjct 941 CAATATGCGCGTGATGTGGTTCGCGGCAAGGTTGTAGCGTGTCAGTATGTCATTGATGCT 1000 Query 606 TGCCAGCGTCACATTGATGATATGGCGGCGGAGAA---GAGTAAAAGGTTTCGGTACCGC 662 ||||| || ||||||||||||||||| ||||| | ||||| || || || || Sbjct 1001 TGCCAACGACACATTGATGATATGGCCCAAGAGAAAGGGCGTAAA---TTCCGCTATCGA 1057 Query 663 TTTGATAAAGACATGGCTGAGAAAGCTGCAAAGTTTA 699 |||||||||||| |||| || |||| || ||||||| Sbjct 1058 TTTGATAAAGACTTGGCAGAACAAGCCGCTAAGTTTA 1094 Score = 212 bits (234), Expect = 2e-50 Identities = 312/442 (71%), Gaps = 0/442 (0%) Strand=Plus/Plus Query 1739 TGAGGATCGCCGTACTGCGGAACGTTTTCAGAAATGGGTTGAAATGGGCTTTTTGACAGT 1798 |||| ||| | || || ||||| ||| |||||||| |||| ||| ||||| | Sbjct 2300 TGAGAATCAGAGAACCGCAGAACGGTTTAGAAAATGGGTGGAAACAGGCCATTTGAAGCT 2359 Query 1799 AACTGATGGTGCGGAGGTGGATTACCGCTACATCCTTGAAGAGGCCAAAGCTGCGAACAA 1858 |||||| ||||| || | ||||| ||| || | || || |||||||| | ||| Sbjct 2360 AACTGACGGTGCCGAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTT 2419 Query 1859 ACTGAACCCGGTCAGCGAATCCCCCATTGATCCATTTGGTGCCACCGGGCTTTCACATGA 1918 |||||| | | ||| ||| ||||| || || || || | || || | Sbjct 2420 GAATAACCCGATTAATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACCA 2479 Query 1919 TCTAGCTGATGAAAACCTGAATCCCGTCACTATCATCCAGAATTACACCAACATGTCCGA 1978 || |||||||| | || || |||| || | || || ||||| || ||||| || Sbjct 2480 ACTGGCTGATGAGGGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTGA 2539 Query 1979 TCCGATGAAAGAACTGGAAGCGGCGATTGAATCGGGTCGCTTTCATCATGACGGCAATCC 2038 ||||||||||| || ||||||||||||| || || |||||||||||||| ||||| || Sbjct 2540 CCCGATGAAAGAGCTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCC 2599 Query 2039 CATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGACGT 2098 |||||||| |||||||| || || ||||| || ||| | |||||||||||||| || Sbjct 2600 AATCATGACATGGTGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATGT 2659 Query 2099 GGTGAAGCCTATTAAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCACTGATTAT 2158 || | |||||| || ||||| ||||||||||| || ||||| || || | ||||| Sbjct 2660 CGTTAGGCCTATAAAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTAT 2719 Query 2159 GGCGGTTGGCAGAGCCATGCTG 2180 ||| | || | || |||||| Sbjct 2720 GGCTATCGGACGGGCGATGCTG 2741 Score = 205 bits (226), Expect = 2e-48 Identities = 194/248 (78%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1173 ACAACAATGCTTACAGGTATGGGCGCGCGCCGACAGCCGCTGATGTGGGCAATAACCACG 1232 ||||| ||| | || || ||||| || | || |||||| |||||||||| || ||||| Sbjct 1634 ACAACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCACA 1693 Query 1233 GCGGGCTACAACATCGAGGGGCCGTGTTACGACAAGCGACGCGAAGTGATTGAGATGCTG 1292 || || || |||||||| ||||| || ||||| ||||| |||||||||||||||||| || Sbjct 1694 GCAGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTTG 1753 Query 1293 AACGGATCGGTGCCGAACAACGAACTTTTTGGCGTGATTTACACGGTTGATGAAGGGGAT 1352 || || |||| || || | ||| | || || || || || || || ||||| || || Sbjct 1754 AATGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGAC 1813 Query 1353 GACTGGACAGATCCAAAAGTGCTGGAGAAAGCAAACCCGAACATTGGGGTGTCAGTATAC 1412 |||||||||||||| || |||| ||||||| ||||||||||| ||||| ||||| ||| Sbjct 1814 GACTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTAC 1873 Query 1413 CGTGACTT 1420 |||| || Sbjct 1874 AGTGAGTT 1881 Score = 152 bits (168), Expect = 1e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 841 ACACAGAGATACCACGTAAGAACGGGAAATCGGCTATTTCAGCTGGTGTAGCTCTCTACT 900 |||| ||||| || ||||| || ||||||||||||||||| || || || || | || | Sbjct 1292 ACACCGAGATCCCCCGTAAAAATGGGAAATCGGCTATTTCTGCGGGGGTCGCATTATATT 1351 Query 901 GTTTCACCTGTGATAACGAATTCGGTGCGGAAGTATACTCCGGCGCCACGACTGAAAAAC 960 |||| || |||||||||||||| ||||| ||||| ||||| || || || || ||||| | Sbjct 1352 GTTTTACGTGTGATAACGAATTTGGTGCTGAAGTTTACTCGGGTGCAACAACCGAAAAGC 1411 Query 961 AGGCGTGGGAGGTATTTCGTCCCGCGCGTCTGATGTGTAAGCGCACACCACTACTGGTGG 1020 | |||||||| || || | || || | ||||| ||||| ||||| |||| | Sbjct 1412 AAGCGTGGGAAGTGTTCAGGCCTGCAAAATTAATGTGCAAGCGTACACCGTTACTCACAG 1471 Query 1021 AGGCATTCGGTATAGAGGTGAATGCCTCAAACCT 1054 | ||||| ||||| || ||||| ||| |||||| Sbjct 1472 AAGCATTTGGTATTGAAGTGAACGCCAAAAACCT 1505 >seq26734 Length=1040 Score = 138 bits (152), Expect = 3e-28 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 704 GTTACTTCCACATACAAAAGGTGAATGGGCGTTCAAACGTATGCTGATTACCCTGGAACC 763 |||| | || || ||||| || || ||||| || ||||| || | |||||| || ||||| Sbjct 1 GTTATTACCCCACACAAAGGGGGAGTGGGCATTTAAACGAATTCCGATTACGCTCGAACC 60 Query 764 GTGGCAACTTTTCATCGTGTGCTGTGCCTTTGGCTGGGTACAGAAGGGAACAAAGCTTCG 823 |||||||||||| ||||| || ||||| ||||||||||| || || || || || ||| | Sbjct 61 GTGGCAACTTTTTATCGTTTGTTGTGCATTTGGCTGGGTGCAAAAAGGTACGAAACTTAG 120 Query 824 TCGTTTTCGTGAGGTCTACACAGAGATACCACGTAAGAA 862 || |||||||| || ||||| ||||| || ||||| || Sbjct 121 GCGATTTCGTGAAGTTTACACCGAGATCCCCCGTAAAAA 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128304647785812