Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq13683 120 6e-23 seq13268 118 2e-22 >seq13683 Length=3702 Score = 120 bits (132), Expect = 6e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11546 TTCATTCATTGTCATAAAGGCACTGTCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCGGC 11605 || |||||| || ||||| || | |||||| | || |||||||| ||||| | || Sbjct 1283 TTTATTCATAAACACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGT 1342 Query 11606 TATCTCATTAACGTAAAGGAATGGTGGGAGACAAACGACCCGCCCGGAACCTTTCGCCTT 11665 ||| | ||| || | || |||||| | || ||||| | |||| || ||||| ||| Sbjct 1343 TATTTAATTCGGGTTATTGAGTGGTGGAAAACTAACGAAACCGCCGGCACGTTTCGTCTT 1402 Query 11666 GATATCGGTGTGCTGGAAAGCGGTATCACGGAGGAGATGTATCTGGAAATGGAACGGCTG 11725 |||||||| ||||| |||| ||||| || || || ||||||| || | ||| || Sbjct 1403 GATATCGGGGTGCTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCATTG 1462 Query 11726 ATTGCCGATGCCAAACCCGCAAGTCGCCATCTTATCGGTCT 11766 ||| ||||| ||||| || || || || ||||||||||| Sbjct 1463 ATTTTTGATGCAAAACCGGCGAGCCGTCACCTTATCGGTCT 1503 >seq13268 Length=3871 Score = 118 bits (130), Expect = 2e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23355 CCGCCTTTTAGTGGATTCAGAGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCA 23414 || || |||| |||||| | | | ||| ||||| || ||||| || | ||| ||| Sbjct 3049 CCCCCATTTAATGGATTTAAGGTAATAGCAAATTGCAAATAATCAGGGGCTAAGTGAGCA 3108 Query 23415 TAGGCCATCGTCTGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTG 23474 || ||||| ||||| ||||| | || || || | || |||||||| || | |||||| Sbjct 3109 TAAGCCATTGTCTGTTGAATATTGGCGTGACCTAATATTTGTTGCAGAGCAACAATATTG 3168 Query 23475 CCCCCGTTCATCATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTGATTG 23534 || || ||||||||||| || |||||||| ||||||| || | ||| || || ||| | Sbjct 3169 CCACCATTCATCATGAAGTGACTTGCGAAAGTATGCCTAAGAACGTGCGTAGCTTGACCG 3228 Query 23535 GGTGGTATATCAGGTTTCAC 23554 ||| | ||||||||| || Sbjct 3229 TCTGGCAAATCAGGTTTAAC 3248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98169321147480