Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq3187 150 2e-31 seq27670 107 2e-18 >seq3187 Length=10884 Score = 150 bits (166), Expect = 2e-31 Identities = 155/199 (78%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254 |||||||||||||| |||| ||||| | || || || ||| |||||||| ||||| Sbjct 7531 CCGTAGTCCATATGGCGAACTCGGTTACCTTCAACCCCGCGGTTGTTTTTCAGGACTAAC 7590 Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314 ||| | || ||||| | |||||| ||||| ||| | ||||||||||||||||| | | Sbjct 7591 AGGCTTTCAACTTCAAGGTGCCAAATTGGGTAAAATAAGGTAGCAGCACCACCACGGACA 7650 Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374 ||||||||||| |||||||| || ||||| ||||| || || |||| ||||| ||| || Sbjct 7651 CCACCTTGAGAGCAAGATTTAACCGCAGTCTGGAAGTGCTTGTAGAACGGAAT-ACAGCC 7709 Query 142375 GTATGTCGAA--CTTCACC 142391 | ||| ||| ||||||| Sbjct 7710 -TGTGTGGAAAGCTTCACC 7727 >seq27670 Length=3875 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 62076 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62135 || || ||||||| |||||||| |||| ||||| |||||| |||||||| || ||| Sbjct 1473 GTGAAAGTACGAGTAATAACGTCTTGCTGTTGTTCTTTAGTCAGTGAGTTAAAACGCACT 1532 Query 62136 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGG 62179 |||||||| ||||||||||| |||||||| |||||||| || || Sbjct 1533 GCATAACCTGATACACGGATAGTCAGCTGTGGATATTTCTCTGG 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535841761267200