Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3053 89.7 3e-13 >seq3053 Length=25279 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| ||||| ||||| ||||| || || ||||| ||||| | || || || Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCT 10112 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| ||| |||| |||||| || || | || || || ||||| || | Sbjct 10111 AATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGA 10052 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | || ||||| |||| || || | || || || || Sbjct 10051 ATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTTC 9992 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || |||||||| || || ||||| || Sbjct 9991 CCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318648746707068