Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq13268 109 1e-19 seq23182 82.4 2e-11 >seq13268 Length=3871 Score = 109 bits (120), Expect = 1e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 22757 TTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCATGTCC 22816 ||||| || ||||| || | ||| ||||| ||||| ||||| ||||| | || || || Sbjct 3081 TTGCAAATAATCAGGGGCTAAGTGAGCATAAGCCATTGTCTGTTGAATATTGGCGTGACC 3140 Query 22817 CAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGCGAATGT 22876 | || |||||||| || | |||||||| |||||||||||||| || |||||||| || Sbjct 3141 TAATATTTGTTGCAGAGCAACAATATTGCCACCATTCATCATGAAGTGACTTGCGAAAGT 3200 Query 22877 ATGCCGCAGGATGTGGGTTGCCTGATTGGGTGGTATATCTGGCTTCAC 22924 ||||| || | ||| || || ||| | ||| | ||| || || || Sbjct 3201 ATGCCTAAGAACGTGCGTAGCTTGACCGTCTGGCAAATCAGGTTTAAC 3248 >seq23182 Length=1552 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 23760 TGTTAACCAGTCTGTTTTTCGGAGTGGTCTGATTCTGTTGGTTTTTGCCCAATGTGTGCG 23819 ||||||||||| | ||||| || ||| ||| ||||| || | ||||| |||||||| Sbjct 1545 TGTTAACCAGTTTTCTTTTCTGAATGGGGTGAGGTTGTTGTTTCTGGCCCATTGTGTGCG 1486 Query 23820 AGAGCCGGCGCGATCTGACCAGCTT 23844 |||||||| ||||| |||||||||| Sbjct 1485 AGAGCCGGTGCGATTTGACCAGCTT 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104426055985032