Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq7507 138 3e-28 seq23044 98.7 3e-16 seq17233 86.0 2e-12 seq17154 86.0 2e-12 >seq7507 Length=6299 Score = 138 bits (152), Expect = 3e-28 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 10158 ATCGTTATATTAATGTTCTTGCTGCAGGTGCTAAATATGGTTCATCAGAAATAACTGATA 10217 |||||||||||||||| | || ||||| || || ||||| || || ||| | | ||| | Sbjct 1247 ATCGTTATATTAATGTGTTAGCAGCAGGCGCAAAGTATGGGTCTTCTGAAGTTAATGAAA 1306 Query 10218 CAGCCGATGCCATTAAAAATGGGGGTGTGGCCGCAGCACAAGCGGGGATCGGGTTTGAGA 10277 || | || || || || || | ||||| || || || | || || | ||||| Sbjct 1307 CATCTGAAGCAATAAAGAAAAGTGGTGTAGCAGCTGCGAATGCCAAAATGAGCTTTGAAG 1366 Query 10278 CGTTAAACGCTGCTATTCAGGTTCTCGCTGAACGTGAGATTAAAGGTGGTCAGGCCGGTA 10337 |||||| ||||| ||||| || || || |||||| | ||||| | | || |||| Sbjct 1367 AGTTAAATGCTGCAATTCAAACGCTTGCGGAGCGTGAGGTCAAAGGGTCTGATGCGGGTA 1426 Query 10338 CAGCGCTTCGCAACGTTATACTGACGCTGGAAAAAGGGACAGATCAAAGCCTAAAACCAT 10397 | || ||| | ||| | || ||| ||| ||| | | ||||| ||| ||| ||||||| Sbjct 1427 CCGCACTTAGAAACATGATCTTGAAGCTAGAAGCAAGCACAGACAAAAACCTTAAACCAT 1486 Query 10398 CAGTTGTTGGACTTAGCCAGGCATTGGAGAACTTAAGTAATAAAAATCTATCAACA 10453 | |||||||| ||| || ||||| || |||||| |||| || ||| |||||| Sbjct 1487 CGGTTGTTGGTCTTGGCGGTGCATTAGAAAACTTAGGTAAAAAGAATTATTCAACA 1542 >seq23044 Length=7840 Score = 98.7 bits (108), Expect = 3e-16 Identities = 195/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 1963 GGAGCTACAGCCTTATCCCACGAATTAGCGGATAACGGATTTGAGCCAATCAATATCCGA 2022 || || ||| |||||| ||| || | || ||| | ||||| | || |||| || Sbjct 2457 GGCGCAACAAACTTATCTCACCAACTGGCTGATGAGGGATTAAACCCTATCACCATTGTT 2516 Query 2023 CAAGACTTTACCAATATGTCCCCACCGATGAAAGAGCTGGAAGCTGCGTTGGCCGGTGGT 2082 ||| ||| || |||||||| |||||||||||||| ||||| ||| | || || Sbjct 2517 CAAAACTACACGAATATGTCTGACCCGATGAAAGAGCTTGAAGCGGCGATTGCTTCAGGG 2576 Query 2083 CGTTTTCATCATGATGGCAATCCTATTCTAGCGTGGTGCATTAGTAACGTTCTCGGAACA 2142 || ||||||||||||||||| || || | | ||||| || | || || | || | | Sbjct 2577 CGCTTTCATCATGATGGCAACCCAATCATGACATGGTGTATGGGGAATGTGGTGGGTAAA 2636 Query 2143 TTTGTCCCCGGTAGTGACGACAGAGTTCGGCCTACCAAAGGGGATAAACAATCAAAAATA 2202 | | | || |||| || || ||| |||||| |||| | | || || ||||| Sbjct 2637 TATTTACCGGGTAACGATGATGTCGTTAGGCCTATAAAAGAGCAAAACGAAAATAAAATT 2696 Query 2203 GACGGTGCCACAGCCCTGCTAATGGCTATTGGCAGAGCAATGCTTCATG 2251 |||||||| || | | |||||||| || | || ||||| |||| Sbjct 2697 GACGGTGCTGTCGCGTTAATTATGGCTATCGGACGGGCGATGCTGCATG 2745 >seq17233 Length=9709 Score = 86.0 bits (94), Expect = 2e-12 Identities = 180/266 (68%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 15289 CATAGTACTGGCCGGCCACCCTATTGATCGGATAGGTCGTATCTGGTTGGGTGATGATTT 15348 ||| | ||| || | |||||| ||| || || ||||| || ||||| ||||||||| Sbjct 8375 CATTGCACTAGCTGCCCACCCAATTCATAAAATTGGTCGCATTTGGTTAAATGATGATTT 8316 Query 15349 AATCAGTACCTTTGAAGACTATGCTACCTGGGAACTTCATAATGATCGGTCGACCTGCGA 15408 || |||| || ||| | | | | || ||||||||| || | || | || Sbjct 8315 GATAGAAACCTATGGCGACAAGGTCAGTTACGAGTTTCATAATGGGCGCACCACAAGTGA 8256 Query 15409 CCCTTTCATGCTTGAAAAATGT-CCGTCATGGAAAGAGGATATGATAGGTAAAGGGTTGG 15467 ||| | | ||||| ||| || ||||||||||| || ||||| || || || | Sbjct 8255 CCCATATTTA-TTGAAGCATGCGCCCTCATGGAAAGATGACATGATCGGCGAAAATTTAG 8197 Query 15468 CATGGCTCAGAGTATCACTCAAGTTTAATGCAGAAAAATTCCCGTATGGCTTACCGAATA 15527 | ||| | | || |||| || | |||| ||||||||||| ||||| |||| ||| Sbjct 8196 CGTGGTTACGGCTAACACTTAAATACGATGCTGAAAAATTCCCCTATGGAGTACCTAATG 8137 Query 15528 TTAAAGCTGAGGTCTGGGGGAAAAAG 15553 | |||| ||| | ||||||||| || Sbjct 8136 TCAAAGTTGAAATGTGGGGGAAAGAG 8111 >seq17154 Length=1607 Score = 86.0 bits (94), Expect = 2e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 15891 ATCAAATGGCCGATTCCGTTCAAATCACAACGGAAACTTCGATGCGTGATGCGACCAATG 15950 ||||||| ||| ||||| | ||||| | ||| | | | || ||||| ||||||| Sbjct 1529 ATCAAATCATCGACACCGTTAACATCACGCCTGAACTTGCACTACGCGATGCAACCAATG 1470 Query 15951 CCATTTATGGGACTTTCGTTGACTGGGAGCAGCAATCTACCAAGATTGATTTTACTCCAG 16010 ||||||| || || || || || |||||||||| | || | |||||| || | Sbjct 1469 CCATTTACGGCACCTTTGTCGATGCCGAGCAGCAATATGTTAAAACAGATTTTGAGCCGG 1410 Query 16011 TTCGCGTGAATGAATGGATTGTCGAAGATGGCTTAGAAATTAAAGAA 16057 | || ||||||||||||| || ||||| |||||||| |||||| Sbjct 1409 TCATTGTTAATGAATGGATTGATGAGGATGGGTTAGAAATCAAAGAA 1363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148104846479292