Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq3187 145 1e-29 >seq3187 Length=10884 Score = 145 bits (160), Expect = 1e-29 Identities = 183/251 (73%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 147357 CACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAA 147416 ||||| ||| ||||| |||| || ||||| ||||||||||||||||| || |||||| Sbjct 7715 CACACAGGCTGTATTCCGTTCTACAAGCACTTCCAGACTGCGGTTAAATCTTGCTCTCAA 7656 Query 147417 GGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAA 147476 |||||||| ||||| |||||||| || | |||||| || |||||| | ||||| ||| Sbjct 7655 GGTGGTGTCCGTGGTGGTGCTGCTACCTTATTTTACCCAATTTGGCACCTTGAAGTTGAA 7596 Query 147477 AAGCTTCTTGTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGAC 147536 | || | || ||||| |||||| || ||||||| ||||| |||| ||| | ||| Sbjct 7595 AGCCTGTTAGTCCTGAAAAACAACCGCGGGGTTGAAGGTAACCGAGTTCGCCATATGGAC 7536 Query 147537 TACAGCGTATCAATTAACCGATTGATGATGCAACGCCTGGTTAATAACGAGTACATCACG 147596 ||| | || |||| | | | |||| || |||| ||| | ||||||| Sbjct 7535 TACGGTGT-GCAATNNNNNNNNNNNT-ACG-AACGTTTGATTAAGAACCAAGACATCACC 7479 Query 147597 CTATTCAGCCC 147607 ||||||||||| Sbjct 7478 CTATTCAGCCC 7468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783016046487840