Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq23044 183 1e-41 >seq23044 Length=7840 Score = 183 bits (202), Expect = 1e-41 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1903 CCGCTCGACCCGCACGGCGCAACGAACCTGTCGCACCAGCTCGAGGACGAAGGGCTGACG 1962 ||| | ||||| ||||||||||| ||| | || ||||| || | || || || | | Sbjct 2442 CCGATTGACCCTCACGGCGCAACAAACTTATCTCACCAACTGGCTGATGAGGGATTAAAC 2501 Query 1963 CCGGTCACGATCGTGCAGAACTACACGAACATGTCGGACCCAATGAAGGAGCTTGAGGCG 2022 || |||| || || || ||||||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 2502 CCTATCACCATTGTTCAAAACTACACGAATATGTCTGACCCGATGAAAGAGCTTGAAGCG 2561 Query 2023 GCGATTACGGCGGGCCGATTCCATCACGACGGCAACCCGATCATGACGTGGTGTGTCAGC 2082 |||||| | | || || || ||||| || |||||||| |||||||| |||||| | | Sbjct 2562 GCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACCCAATCATGACATGGTGTATGGGG 2621 Query 2083 AACGTCATCGGCAAGAACCTGCCGGGAAATGACGATGTGGTGCGCCCGATCAAGCAGGGC 2142 || || | || || | | ||||| || || ||||| || | || || || || Sbjct 2622 AATGTGGTGGGTAAATATTTACCGGGTAACGATGATGTCGTTAGGCCTATAAAAGAGCAA 2681 Query 2143 AACGACAACAAGATTGACGGTGCTGTCGCACTAATCATGGCGATAGGCCGCGCCATGCT 2201 ||||| || || ||||||||||||||||| |||| ||||| || || || || ||||| Sbjct 2682 AACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTATGGCTATCGGACGGGCGATGCT 2740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175377301093284