Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3053 194 4e-44 >seq3053 Length=25279 Score = 194 bits (214), Expect = 4e-44 Identities = 175/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||||||| || || || ||||| ||||| || || | || | || || Sbjct 10175 AAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATC 10116 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| ||||||||||||||||| | |||||||| ||||| ||||| ||||| || Sbjct 10115 TTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC 10056 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| ||||| ||||| || | || || |||||| ||||||| || || || Sbjct 10055 CTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGT 9996 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 ||| || || || ||||||||||| ||||||||||||||| Sbjct 9995 CTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTGTGT 9956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150909125483528