Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq13683 114 3e-21 >seq13683 Length=3702 Score = 114 bits (126), Expect = 3e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 11862 CACAAGGGGACTATCGGCGCAATCCGTCGGGTAGTGGAGCCTCTCGGCTATGTCATCAAT 11921 ||||| || || || |||||| | ||||| || || ||||| | || ||| | || Sbjct 1295 CACAAAGGTACGATTGGCGCATTGCGTCGTGTGGTTGAGCCATTGGGTTATTTAATTCGG 1354 Query 11922 GTAACGGAATGGTGGGAAAGCAGCGACCCGCCCGGCACATTCCGGCTTGATATCGGGGTG 11981 || | || |||||| ||| | ||| | ||||||| || || ||||||||||||||| Sbjct 1355 GTTATTGAGTGGTGGAAAACTAACGAAACCGCCGGCACGTTTCGTCTTGATATCGGGGTG 1414 Query 11982 CTTGAAAGTGGCATTACCGAGGAAATGTATTTCGAAATGGAACGACTGATTGCGGATGCA 12041 ||||||| || ||||| || ||||||||| || | ||| | ||||| |||||| Sbjct 1415 CTTGAAACGGGTATTACTGAAGAAATGTATCAAGAGTTAGAAGCATTGATTTTTGATGCA 1474 Query 12042 AAACCAGCCAGTCGTCATCTGACTGGCCTGAATATT 12077 ||||| || || ||||| || | || || | |||| Sbjct 1475 AAACCGGCGAGCCGTCACCTTATCGGTCTCACTATT 1510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97875037095816