Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq24858 161 2e-35 seq19828 109 1e-19 seq6146 102 2e-17 seq23797 100 7e-17 seq1477 95.1 3e-15 seq26221 91.5 4e-14 >seq24858 Length=2428 Score = 161 bits (178), Expect = 2e-35 Identities = 245/343 (71%), Gaps = 17/343 (5%) Strand=Plus/Minus Query 33799 TTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATT 33858 ||||||| ||||| || |||||||||| |||||||| |||||| | | |||||| | | Sbjct 2411 TTTTTTAGGATTTCGTTTTCCATTTCAAGGCGTTGTATCTTTTTTTTCATCTCACGAAGT 2352 Query 33859 TCAATTTGTTCCGGGGTAATGGGGGAGGCTTTT-GGTGTTTTGCCCTGACGCTCATCACG 33917 ||||| || || || |||| | || || | | || ||||| || || ||||| || Sbjct 2351 TCAATCTGCTCGGGCGTAA-GCGGAAGCCCCGTCGGAGTTTTACCTTGTCGCTCTAATCG 2293 Query 33918 CAGTTGTTTGACCCATCTTGTCATTGTGGAAAG------GCCAACATC-----CATAGCT 33966 ||||| ||| ||||||| | | || || ||| ||| | || ||| || Sbjct 2292 CAGTTTTTTAACCCATCGATTAAGTGCGGCAAGACTCACGCCCANCTCACGCCCATTGCC 2233 Query 33967 TTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTA 34026 | ||||| | || || | ||| | |||||||| |||| || ||||| |||| ||||| Sbjct 2232 TGTGCGGCTTTAGCTACGGAGTAATGATGGTCAACGACCATTTTAGCGGCTTCGAGTTTA 2173 Query 34027 AACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAGCA 34085 || ||||| || ||| ||| ||| | |||||||| |||| | ||||| || | Sbjct 2172 AATTCTGCTG-AATATTGCTTAAC--CATGTGCTCACCTGTGATGTTATTGAGGTAAGAA 2116 Query 34086 TATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAA 34128 |||||||||| ||||||||||||||| | | ||||||||||| Sbjct 2115 TATCACCTCTAGTCAGGTGGCCAAATTAACTATGCCACTTCAA 2073 >seq19828 Length=1506 Score = 109 bits (120), Expect = 1e-19 Identities = 241/360 (67%), Gaps = 1/360 (0%) Strand=Plus/Minus Query 33058 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 33117 |||||| |||| | || | || || || ||||| || ||||||||||| || || Sbjct 977 CCATTCTGTCTTTAAGCTTCGAAAAAATCGCTCCATCGGCGCATTATCCCAGCAATTACC 918 Query 33118 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCT 33177 || || | ||| || | ||||| || ||||| | ||| || || | |||| ||| Sbjct 917 TCGTCGAGATAAACTTTGCTTTATCTGATAACGCCATAGTAATTGACGATATTGCCGGCT 858 Query 33178 CGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTTC 33237 ||||||||||| || ||||| || |||| || | |||||||| | | ||| Sbjct 857 TGTATAATGACTTCCTTGATCTGAATGAAACAGCATATTTCTTGGCTTACCTCTTGATTC 798 Query 33238 CCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 33297 | |||||| | ||||| || || ||| || || || || |||| ||||| Sbjct 797 AAAAGCCATTGATAATGCTTTTCCCGTTAGTTGGCTATCGGGTGA-AAAGACACCGCCCA 739 Query 33298 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 33357 || || || |||| || || | || | ||||| || || || |||||| ||||| Sbjct 738 ACCAACGGGCTTTCGAGCAAATAAATCCATCACAACCGCAAGATATATCCAGCGATTACC 679 Query 33358 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 33417 | ||| ||||| || || ||||| ||| || || |||||||| || || || || || Sbjct 678 TGACCAAATATACGTTACGTCACCTACCCAAACTTGGTTTGGCTCCGTGACTGCAAATTG 619 Score = 87.8 bits (96), Expect = 4e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 |||||||||||||||||| ||| ||||| |||||| ||| ||| ||| ||| ||| Sbjct 1211 TGAAGTGGTCAACAAAAATTGGTCACCGTTTTAGAGCTTTCCCAATATAATCGTTCTGAT 1152 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCT 32976 || || || | ||| ||||||||||||| |||||||| Sbjct 1151 TCATTGGGCGTTAAGCCACCGTTATATTGATGCGGTCT 1114 >seq6146 Length=11763 Score = 102 bits (112), Expect = 2e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 23857 TCGCGCACCGTCTTGCGGTTGGCATCAATTAGCTTTGGAATTTCCTTCAGTTCAGCAACA 23916 || ||||| || ||| ||||| || ||||||||||| ||||| || | || || || Sbjct 2346 TCTCGCACAGTTCGGCGATTGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACC 2287 Query 23917 AGGTCTTTGCCAAGACCATCGAGATATGTTTTCGTCTGCGCAACTTTATACGCCAGAGAA 23976 | |||||| || || ||||| || || ||||| | || || ||||| || |||| ||| Sbjct 2286 AAGTCTTTACCGAGCCCATCAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAA 2227 Query 23977 GCGATCTCCTTTCTGCCCTTTGCCGTTGTGATATCAGGCACAAAGGACATAACTTC 24032 || || ||||| | || || | || |||| |||||| | ||| || ||||||| Sbjct 2226 GCAATTTCCTTGCGACCTTTAACAGTGGTGACATCAGGAATAAAAGAATTAACTTC 2171 >seq23797 Length=2989 Score = 100 bits (110), Expect = 7e-17 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 |||||||||||||||||| ||| ||||| |||||| ||| ||| ||| ||| ||| Sbjct 2883 TGAAGTGGTCAACAAAAATTGGTCACCGTTTTAGAGCTTTCCCAATATAATCGTTCTGAT 2824 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998 || || || | ||| ||||||||||||| |||||||| | ||| ||||| |||| | Sbjct 2823 TCATTGGGCGTTAAGCCACCGTTATATTGATGCGGTCTAATCTGACTATAATACCCAATG 2764 Query 32999 ATATA 33003 ||||| Sbjct 2763 ATATA 2759 >seq1477 Length=12152 Score = 95.1 bits (104), Expect = 3e-15 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 ||||||||||||| || | ||||||| ||||| | ||| | | | || ||| Sbjct 11876 TGAAGTGGTCAACTAATATTGGCCACTCTATTAGACTGTTTGTAAAACAGTCGCTCAGAT 11935 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998 || ||||||| || || |||||||| ||| ||||| | |||||||||| || | Sbjct 11936 TCATTTGGGGTCAATCCCCCGTTATACCAGTGGGGTCTGATACCACTGTAATAACCCGTG 11995 Query 32999 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 33058 ||||| ||| | | |||| || | | || | ||||||| |||||| Sbjct 11996 ATATAACAAACAATGTTGAGTTCTGCTTCTTTCGGGGTTTCATAACCCATTGAAGGCATC 12055 Query 33059 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 33118 || || | || | ||| || || || || |||||||||||||| ||||| ||||| || Sbjct 12056 CACTCATGTTTTAAACTTCTAAAAAATCGCTCCATTGGGCTGTTGTCCCAACAGTTACCT 12115 Query 33119 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCA 33153 || || |||| ||| || || || || ||||| Sbjct 12116 CGGCGACTCAGACTTTGCACAATTTGATAACGCCA 12150 >seq26221 Length=1580 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33320 AGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCA 33379 ||||| | || || ||||| |||||||| || || || ||||| || || |||||||| Sbjct 176 AGGTCTAACACGACAGCGAGATACGCCCACCGTTTTCCTGTCCAAATGTACGTCACATCG 117 Query 33380 CCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATA 33439 ||||||||||| ||||| || | || || || || || | || || | ||||| || Sbjct 116 CCGCACCACACTTGATTGGGGGCAGTGACAGCAAATTGGCGGTCGAGTAAATTAGGAATG 57 Query 33440 GCAACATGTTCATGACCACCACGTTTATACCGGTG 33474 || |||||||| | | || ||||||| || || Sbjct 56 GCGACATGTTCTTTTGCTCCGTGTTTATAGCGATG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124766841686460