Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq10075 291 5e-74 seq6483 289 2e-73 seq4101 89.7 3e-13 >seq10075 Length=2549 Score = 291 bits (322), Expect = 5e-74 Identities = 313/409 (77%), Gaps = 9/409 (2%) Strand=Plus/Plus Query 7749 CAGCCTATTTAGACCGTTTCTTCGCCATTTAA--GGCGTTATCCCCAGTTTTTAGTGAGA 7806 |||| |||||||||||| | ||||| |||| ||||| || ||||| ||| || ||| Sbjct 257 CAGCTTATTTAGACCGTAT--TCGCCCTTTATACGGCGT-ATTCCCAGATTTCAGGCAGA 313 Query 7807 TCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACAT 7866 |||| || ||| ||||||||||||||| | |||||| || ||||| ||||| | ||| Sbjct 314 TCTCGCCTGCTGTCGTATCATTTGGTCCACTTTAAACAGATTTGCCAGTGTGAACAGCAT 373 Query 7867 CGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTCACGAAGCCGAACTG 7926 || | || ||| ||||||| ||| || ||||| | ||||| | || |||||||| Sbjct 374 GGCTAACTGTGAATCATTTTTCATCAAACCTTTGTAGCGCGCTTTAATAAAACCGAACTG 433 Query 7927 TCGCTTGATGATGCGAAATGGGTGCTCCACCCTGGCCCGGATGCTGGCTTTCATGTATTC 7986 | |||||||||||||| |||||||| || | || ||||| |||||||||| |||||| Sbjct 434 ACATTTGATGATGCGAAACGGGTGCTCTACTTTTGCTCGGATACTGGCTTTCAGGTATTC 493 Query 7987 GATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTTTCAAGGTTCTTACCTTGCCGGG 8046 || || ||||| | |||||| || |||||||||| |||||| | ||| || || ||||| Sbjct 494 AATCTTTATGGCGGCTTTGTTTTTTCGTGGATGCTTTTTCAAAGCTCTGACTTTTCCGGG 553 Query 8047 GCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCT--GTGGCGCC 8104 |||||| ||||| | ||| ||||| || | || |||||| || |||| ||||| Sbjct 554 GCGCTCAGCGATAAACCACTCCACCTCTGCGTCTTTCAGCTCTTCACGCTTCTCTGCGCC 613 Query 8105 CCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCA 8153 || | || ||||||||||| |||||||||| || ||||| ||||||| Sbjct 614 CC--GATAACCGGCATCGGCGGAGACAAATTCTTCGTCTCCGTGCAGCA 660 >seq6483 Length=21038 Score = 289 bits (320), Expect = 2e-73 Identities = 418/595 (70%), Gaps = 19/595 (3%) Strand=Plus/Plus Query 72013 TTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCAC 72072 |||| || | |||||||| | ||||| | |||||||| || || || ||| | | Sbjct 6 TTTTCAGTTTAGAGATGCCCGGTAACCAGATCATGATGCGTATGCTCGCGTCACTTTCGC 65 Query 72073 GCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTT 72132 ||||||| || || |||||||| || || ||| | |||| || ||||||||||| ||| Sbjct 66 GCGTTGACCAAACGCGTATTCGTACTGGCCAATTAGACGATGAAGATTGGGCGCGTATTT 125 Query 72133 CTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCC 72192 | | | ||||||||| || |||| |||| || || | |||||||||||| || | Sbjct 126 CCAGTACCATGGGTATTTTGATGGAAAAGCGCAACATGTACATTGATGACTCATCCGGTC 185 Query 72193 TGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGA 72252 |||| || |||||| | |||||||| || | ||| |||| ||| | ||||| || | Sbjct 186 TGACACCTACAGAGGTGCGTTCCCGTGCGAGGCGTATTTACCGTGAACACGGTGGCTTAA 245 Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAA 72312 || |||| ||||| |||||||| || | ||||| || || ||| |||||||| | Sbjct 246 GCCTGATCATGATTGACTACCTTCAGTTAATGCGTGTTCCTTCGCTCTCCGATAACCGTA 305 Query 72313 CGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTAC 72372 | || |||||||||||||| || ||||| || || || || ||||| || Sbjct 306 CCCTTGAAATTGCCGAGATCTCGCGCTCGCTCAAAGCCTTAGCGAAAGA----------- 354 Query 72373 CGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGG 72432 || | | || ||||| || ||||| || |||||||| ||||| || | Sbjct 355 --------GCTTAATGNCAGCTTAACCGTAGCCTTGAGCAACGTGCGGATAAACGCCCAG 406 Query 72433 TAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTC 72492 | || || || || ||||||||||| | || |||||||| || ||| | || |||||| Sbjct 407 TTAACTCCGACTTGCGTGAATCAGGGTCTATCGAGCAGGATGCGGACTTAATCATGTTTA 466 Query 72493 TGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTA 72552 | || || || || ||||| ||| | ||||| | || || |||| ||| | ||| Sbjct 467 TCTACCGTGATGAGGTTTACCACGATAACAGCGAGCTCAAAGGGGTTGCGGAGATTATTT 526 Query 72553 TCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCA 72607 | || |||||||| || || || ||||| ||||| || ||| | |||||||| || Sbjct 527 TAGGTAAGCAACGTAACGGGCCGATTGGTACGGTAAGGTTGACGTTTAACGGGCA 581 >seq4101 Length=9500 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 8651 GGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAA 8710 ||||| ||||| || | || | |||| || || | | ||||| || || ||||| Sbjct 6157 GGCTCAATGACATCTAACAGCTGAGGCCACGGTAGTAGGTTATCCATCCGAGATAAGAAT 6098 Query 8711 ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGA 8770 ||||||| | ||||| || || || ||| || ||||||||||| ||||| | || Sbjct 6097 TTCTCTTTCCGTGTCTGGCGACGTTTGCTGGAAAACTCACTGTCGGCAAAGGTTAACTGC 6038 Query 8771 TGACTCATGATGAACCCTGTTC--TATGGCTCCAGATGACAAACATGATCTCATATCAGG 8828 || ||||| |||| | | || | ||| | |||| | |||||||||||||| || Sbjct 6037 TGGCTCAT-ATGACCTCGGTGCGTTATAAATTGCGATG-CCTCCATGATCTCATATCTGG 5980 Query 8829 GACTTGTTCGCACCTTCCTTAGCGT 8853 |||| |||||||||||| || ||| Sbjct 5979 AACTTATTCGCACCTTCCCTAACGT 5955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303112629110286