Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq23044 84.2 7e-12 >seq23044 Length=7840 Score = 84.2 bits (92), Expect = 7e-12 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 1967 ACTATACCAACATGTC--ACCGGCAATGAAGGAGCTGGAAGCGGCTCTTGCCGGTGGACG 2024 |||| || || ||||| ||| | ||||| ||||| |||||||| |||| || || Sbjct 2521 ACTACACGAATATGTCTGACCCG--ATGAAAGAGCTTGAAGCGGCGATTGCTTCAGGGCG 2578 Query 2025 ATTCCACCATGATGGCAATCCCATTCTTACCTGGTGTATCAGTAACGTTATCGGGAAATT 2084 || || ||||||||||| || || | || |||||||| | || || | || |||| Sbjct 2579 CTTTCATCATGATGGCAACCCAATCATGACATGGTGTATGGGGAATGTGGTGGGTAAATA 2638 Query 2085 CATCCCTGGTAGCGACGATCTCGTTCGCCCTACAAAGGGAGACAATCAAAGCAAAATCGA 2144 | || |||| ||| ||| ||||| | |||| ||| | | || ||| ||||| || Sbjct 2639 TTTACCGGGTAACGATGATGTCGTTAGGCCTATAAAAGAGCAAAACGAAAATAAAATTGA 2698 Query 2145 TGGGGCCACGGCGTTATTTAACGCCATGACTCGCGCAATGCTGAATGAA 2193 || || |||||| ||| || || || || |||||| ||||| Sbjct 2699 CGGTGCTGTCGCGTTAATTATGGCTATCGGACGGGCGATGCTGCATGAA 2747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164936614738596