Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq22013 123 3e-23 >seq22013 Length=6837 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 164769 TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGT 164828 |||| ||| | | | |||||| | || || || ||||| || |||| || || ||||| Sbjct 3581 TGGTAATAGTGGTGTGCATGATACCGTTGTAAACCAGTTACTAGCTAAGATCGACGGTGT 3640 Query 164829 AGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGA 164888 ||| ||||||||||||||| || | || ||||||||||||| ||| | |||||||| Sbjct 3641 GGAACAATTAAATAATATTTTAGTTATTGGAATGACCAACCGACGCGATATGATTGATGA 3700 Query 164889 TGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGA 164948 ||| | || || || || |||||||| | |||| ||||| | ||||| || | | Sbjct 3701 AGCTCTTTTGCGCCCCGGAAGATTAGAAGTTCAAATGGAAATTAGCTTACCTAACGAGCA 3760 Query 164949 AGGACGCCTTCAAATTTTAAAAGTTCAT 164976 || || ||||||| ||||| ||||| Sbjct 3761 GGGCCGTGTTCAAATATTAAATATTCAT 3788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 210/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| | |||||||| | ||||| |||| |||||| || || Sbjct 3135 ATTGGGATTTCGGCAAAATGGGAATTGGTGGCTTAGACAAAGAATTCAACGCCATATTTC 3194 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 ||||||| |||||||| | ||||| ||| | | | | ||||| ||||| | Sbjct 3195 GACGAGCCTTTGCTTCACGTGTGTTTCCTCCTGAACTCGTTGAGCAGTTAGGTTGTAAGC 3254 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | | || || |||||||| ||||||| ||||| |||||||| |||||||| || Sbjct 3255 ACGTTAAGGGTATTTTATTGTATGGACCACCTGGAACTGGTAAAACTTTAATGGCCCGTC 3314 Query 164573 GCATTGCT-CAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTA 164628 || | | ||| | || ||| | || ||| |||||||| || ||||| | | Sbjct 3315 AAATCGGTACAA--TGTTGAATGCTAGAGAACCG--AAAATTGTCAACGGTCCGCAGGTT 3370 Query 164629 TTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAA 164688 ||| ||||||| || ||||| || ||||| || || || | ||| || |||||| Sbjct 3371 TTGGACAAATACGTTGGTGAATCTGAAGCGAACATTCGACGACTCTTTGCCGAAGCTGAA 3430 Query 164689 GAAGAACAAAAGA 164701 |||||| | |||| Sbjct 3431 GAAGAAGAGAAGA 3443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595624966365600