Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3712 120 5e-23 seq18913 113 7e-21 seq2116 113 7e-21 >seq3712 Length=2770 Score = 120 bits (132), Expect = 5e-23 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | | || ||||||||||| || || |||||||||||||| Sbjct 296 CGCAAAGCGTCATCGCAAAGTTTTGCGTGATAACATCCAGGGCATTACCAAGCCAGCTAT 237 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| ||||| || ||||||||| | || || | ||||||| |||| Sbjct 236 TCGCCGTTTGGCTCGCCGTGGCGGTGTCAAGCGTATTTCCGGCCTCATCTATGAGGAGAC 177 Query 16552 TCGTGATGTTTTGAAG 16567 ||||| |||| | ||| Sbjct 176 TCGTGGTGTTCTCAAG 161 >seq18913 Length=2274 Score = 113 bits (124), Expect = 7e-21 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | | || ||||||||||| || || ||||| |||||||| Sbjct 548 GCCAAGCGTCATCGCAAAGTTTTGCGTGATAACATCCAGGGCATTACCAAACCAGCTATT 489 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| ||||| || ||||||||| | || || | ||||||| |||| | Sbjct 488 CGCCGTTTGGCTCGCCGTGGCGGTGTCAAGCGTATTTCCGGCCTCATCTATGAGGAGACT 429 Query 16553 CGTGATGTTTTGAAG 16567 |||| |||| | ||| Sbjct 428 CGTGGTGTTCTCAAG 414 Score = 87.8 bits (96), Expect = 3e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || ||||| ||||| || |||||||| |||||| |||||||| | || ||||| |||||| Sbjct 304 TACACCGAACACGCCAAGCGTAAGACCGTCACCGCCATGGATGTGGTGTATGCCTTGAAA 245 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||||| || | | || |||||||| ||||| Sbjct 244 CGTCAAGGTCGCACTCTGTACGGTTTTGGCGGTTAA 209 >seq2116 Length=11510 Score = 113 bits (124), Expect = 7e-21 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | | || ||||||||||| || || ||||| |||||||| Sbjct 11263 GCCAAGCGTCATCGCAAAGTTTTGCGTGATAACATCCAGGGCATTACCAAACCAGCTATT 11204 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| ||||| || ||||||||| | || || | ||||||| |||| | Sbjct 11203 CGCCGTTTGGCTCGCCGTGGCGGTGTCAAGCGTATTTCCGGCCTCATCTATGAGGAGACT 11144 Query 16553 CGTGATGTTTTGAAG 16567 |||| |||| | ||| Sbjct 11143 CGTGGTGTTCTCAAG 11129 Score = 87.8 bits (96), Expect = 3e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || ||||| ||||| || |||||||| |||||| |||||||| | || ||||| |||||| Sbjct 11019 TACACCGAACACGCCAAGCGTAAGACCGTCACCGCCATGGATGTGGTGTATGCCTTGAAA 10960 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||||| || | | || |||||||| ||||| Sbjct 10959 CGTCAAGGTCGCACTCTGTACGGTTTTGGCGGTTAA 10924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79044876094038