Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq30410 143 8e-30 seq13007 120 9e-23 >seq30410 Length=1798 Score = 143 bits (158), Expect = 8e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 39324 GCCAAGCAACAGTGGATTGAGTTCGAATACCACAACCTCGACAGGTTTGAAGAAATATTC 39383 || || ||||| ||||||||||| || || |||||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 39384 ATTTCGATGGACGTTGACGATGTCGGGCGTGAAGCAGCAAGGGAAATCGCAAGCCGACTT 39443 | || |||| | |||||| || ||||| || ||||||| || || || | |||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 39444 GGTGAGCATCGCTGTCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTGATG 39503 ||||| |||| ||||| || ||| ||||||| | |||||||||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 39504 AACGGCGTCACTGAGGATGAAATCTGGCAGTACATCGGAACAGCGTCATATTTCGACCCG 39563 || | || | || |||||| ||||| | | ||| || | || || ||||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 39564 GAAGAGCTTTACAGCGCCCGTGAGTTT 39590 || ||| | | ||| ||||| |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 >seq13007 Length=9541 Score = 120 bits (132), Expect = 9e-23 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26484 GCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACCATTTCGATAGAC 26543 ||||||||||| || ||||| || || | ||||||||| || | |||||||| || || Sbjct 9393 GCATGTTCAGTTAGATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGAT 9452 Query 26544 TCCCAGCCACCCATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTT 26603 ||||| || |||||||| || | | | || | ||||| || | |||||| | |||||| Sbjct 9453 TCCCATCCTCCCATTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACTC 9512 Query 26604 GCCCACGTGTGCCTCAGGTCATGAAAACG 26632 ||||| || ||||||| ||||||||| || Sbjct 9513 GCCCAAGTATGCCTCAAGTCATGAAATCG 9541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149899339446504