Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15048 628 3e-175 >seq15048 Length=4365 Score = 628 bits (696), Expect = 3e-175 Identities = 1281/1893 (68%), Gaps = 25/1893 (1%) Strand=Plus/Plus Query 61974 TTTATT-TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 |||||| ||| ||||| | ||||||||||||| | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 || |||||||| ||||||||||| |||| | | ||||| || |||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 |||| | || ||| | | ||| ||||| | || || ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 62212 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 62213 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAA 62268 || | || | | || ||| | || |||| |||||||| |||| | || | Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTA 1568 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 | || || || | |||| ||| || | | ||||||| | |||| || | || Sbjct 1569 TTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGAT 1628 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 | ||||| ||||||||||| || |||||||||| ||| ||||||||||| ||||||| Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACG 1688 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||| | || || |||||||||||||| || || || ||||| || ||||| ||||||| Sbjct 1689 GTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCA 1748 Query 62449 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCC 62508 | | || | || || | ||| ||| | | ||||||| ||||| | ||||| || Sbjct 1749 CAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCC 1808 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62568 | | || | || || || || || || || ||| || Sbjct 1809 ACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGAC 1868 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 ||| ||||||| || |||||||| || || || || |||||||| ||||| |||| Sbjct 1869 TTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATG 1928 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 | || ||||||| ||||| ||||| | |||||| | | || | | || ||| Sbjct 1929 CGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCAT 1988 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 | || || | | | |||||| ||||| || | ||||||||||||||||| ||||||| Sbjct 1989 AAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTC 2048 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 |||||| | ||| || ||| ||||| || | ||||||||||| | ||| || |||| Sbjct 2049 TATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTT 2108 Query 62809 TATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62865 |||| | ||| || || ||| | ||||| || || | ||| ||| ||||| Sbjct 2109 TATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAGA 2165 Query 62866 GCCCATC---TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCT 62922 ||| | | |||||||| || || |||| || || || || |||||||||| || Sbjct 2166 CTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCT 2225 Query 62923 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 62982 ||| | ||| ||||| | || ||||| || |||||||| || || ||||| || | Sbjct 2226 CATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGA 2285 Query 62983 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63042 |||||||| || || ||| | || || | ||| || || || || |||| ||||| | Sbjct 2286 GGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTG 2345 Query 63043 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTA-TTATAGATTT 63100 |||| | || | ||||||||||| ||| | | ||| | || |||| || | ||| Sbjct 2346 TTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG-GCTTTTACTTTTCTATTC 2404 Query 63101 GTATCTCCTTTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 | ||| ||||||| ||| | | |||||| || || || |||||||| Sbjct 2405 GCGCGTCC---CTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACT 2461 Query 63159 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63218 | | ||| |||||||| | | || ||||| | ||||| ||| ||| | | | ||| Sbjct 2462 TCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACT 2521 Query 63219 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63278 ||||||||||| | ||| |||||||| | ||| ||||| ||| | | ||||||||| Sbjct 2522 CGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCT 2581 Query 63279 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338 || || || || || || || | ||| | ||| | | ||||||||| ||||| || || Sbjct 2582 TCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCT 2641 Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398 ||||| || || | | ||||||||| ||| ||||| || || | ||| | || Sbjct 2642 AAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACA 2701 Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458 || || ||||||| | |||||| | | ||||| || | ||||| || || || ||| Sbjct 2702 TTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATA 2761 Query 63459 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 | | || | || || || | || || || || || || || |||||| Sbjct 2762 GATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGAT 2821 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTA 63578 || | |||||| ||| | | | | | ||||| || || ||| | | ||| || Sbjct 2822 ATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTA 2881 Query 63579 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63638 ||||| || || || | ||| | ||| | ||| | ||| ||| | || || || Sbjct 2882 AGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGAT 2941 Query 63639 GCGTGCGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697 || |||||||| || |||| || || ||| ||||| || ||||| || || |||||||| Sbjct 2942 GCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATC 3000 Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757 |||||| |||| | || | ||| ||||||||||||||||||||| |||| || Sbjct 3001 ATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTT 3060 Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817 | ||| |||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3061 GCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCC 3120 Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || || || || || ||| | ||||| || Sbjct 3121 AAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622688941664560