Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3053 104 2e-17 seq5502 82.4 7e-11 >seq3053 Length=25279 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||||||||| | ||||||||||| | || || || | |||||| | || | ||| Sbjct 9958 ACAAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAAC 10017 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | ||||| |||||| | || ||| |||||| |||||||| || || ||||| | Sbjct 10018 CTTCGGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAG 10077 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 |||||||| | || |||| | || || ||| | ||||||| | | | ||| | Sbjct 10078 ATCAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATT 10137 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||||| || || || | |||||||| || Sbjct 10138 ATAACATTCAAAAGGAGTCAACATTACATCTGGTTCT 10174 >seq5502 Length=7310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| ||||| ||||| | ||| || ||||||||||| || || || ||||| |||||| Sbjct 5921 GAGGGCAAAATGCACGGCTTCCTGCGTATGTACTGGGCGAAGAAAATACTCGAATGGACT 5980 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATT--CTATTTATCTAAACGATAGATACAGTCTCG 71834 | | || ||||| ||||| || ||| | || || || || | | |||| | | Sbjct 5981 GAGTCGCCGGAGCAAGCGCTGGANAATTCGCCATCCTCCTCAATGACAAGTTCAGTTTGG 6040 Query 71835 ACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || ||||| || ||||| ||||| ||| Sbjct 6041 ATGGCCGCGACCCCAACGGCTATGTGGGT 6069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478463958535520