Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15048 217 4e-51 >seq15048 Length=4365 Score = 217 bits (240), Expect = 4e-51 Identities = 1114/1753 (64%), Gaps = 49/1753 (3%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| || | || | |||| | || ||||| ||||| ||| | || |||| ||||| Sbjct 3069 ATCAACGGCAAAATCGCTGAAAGACCTCAGCACATGTTGATGAGGGTGTCTATAGGTATT 3010 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| | ||| | ||| |||| |||||||| || || ||| | | | || Sbjct 3009 CATGGTGATGATATAGATTCCGCAATTGAAACCTACAACTATCTGTCGGAAAGATTTTTT 2950 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 ||||| || | || ||| | | ||||| ||| | || || | || |||||| Sbjct 2949 ACGCATGCATCACCGACACTTTTTGCTGCTGCAACAATTCGACCGCAACTTTCATCTTGC 2890 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 || || || | |||| | ||||| || || ||||| ||| | || || | | || Sbjct 2889 TTCCTACTTACAATGGTTGCAGATTCAATTGAAGGTATTTTTAAATCAGTTGAACAATGC 2830 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCAC 363727 ||| | || || || || || || ||||| || || || || | || || Sbjct 2829 GCTATGATATCTAAATCAGCTGGAGGTATTGGAATAA--ATGTTCATTGCATACGAGCTA 2772 Query 363728 A--GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||| || || | | || ||| || || || ||||| || ||||| | Sbjct 2771 AAGGCACATCTATATCAG--GAACTAATGGAACTTCTAACGGCCTGGTGCCAATGCTAAG 2714 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || ||||| || | ||||| ||||| || || ||||| | || || || Sbjct 2713 AGTTTTCAACAATGTGGCCCGCTACGTTGACCAAGGAGGCGGAAAAAGGCCTGGAGCTTT 2654 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || | |||||| || | ||||||||||||||| | || | |||||| Sbjct 2653 TGCAATCTACTTAGAGCCTTGGCACTCTGATATTTTTGAGTTTTTGGATTTAAAGAAAAA 2594 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 |||||| || || ||| | || |||||| | || ||||| | ||| || | || Sbjct 2593 CACGGGCAAGGAAGAACATAGAGCTCGTGATTTATTTTATGCTTTGTGGATTCCCGATTT 2534 Query 363966 TTTTATGAAGCGCGTGGAGGC-AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 |||||||| || || || || | |||| |||||| || | ||||| ||| | |||| Sbjct 2533 GTTTATGAAACGAGTTGAAGCTAACGAAGA-TTGGTCCCTTATGTGCCCTCACAAGTGTC 2475 Query 364025 CAGGTCTTTCC-GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 | || ||| | || || |||||| || | || | | || ||||| ||||| Sbjct 2474 CTGG-CTTGCATGAAGTTTGGGGTTCGGAATTTGAGACCTTGTATGAAAAATATGAGAAA 2416 Query 364084 GAGGGAAAGGCTCGTA-AGACAATTCCC-GCACAGAAGCTATGGTTTGCCATCATGGATT 364141 |||||| || || | ||| || | || ||| || |||||||| || || || Sbjct 2415 GAGGGAC--GCGCGAATAGAAAAGTAAAAGCCCAGTCCCTTTGGTTTGCGATTATAGAGG 2358 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || ||||| || || |||||| | ||||||||||| ||||| | || || Sbjct 2357 CACAAGTGGAAACAGGTACCCCATATATGCTATACAAAGATTCATGCAATAGAAAAAGCA 2298 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||| ||||| || | || || |||||||| || ||| ||||||| Sbjct 2297 ACCAACAAAACCTCGGTACTATAAAATGCAGTAATCTATGTACTGAAATTGTTGAATATT 2238 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA 364321 | || || || |||| ||||| || ||||| || ||||| || | |||||| | Sbjct 2237 CGGCACCAGATGAGATAGCCGTTTGCAACCTCGCTTCGATTGCTTTAAATATGTTTGTGA 2178 Query 364322 AAGATGGTA---CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA 364378 || | || |||||| | | | | || || || | | || | Sbjct 2177 CAGCGGATAAAGTCTTTGACTTTAAAAAATTAAAAGAGGTCACAAAAATAGTCACCAAGA 2118 Query 364379 ATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATA 364438 || | | || | || || |||||||||||| | || ||||| | || ||| Sbjct 2117 ATTTAAATAAAATAATTGATGTAAATTATTATCCATTACCCGAAGCAAAAAAATCGAATT 2058 Query 364439 TGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCA 364498 |||| ||| | || |||||| ||||||| || || || || |||| |||||| | | Sbjct 2057 TGCGACATAGACCTATTGGTATTGGTGTTCAAGGGCTGGCCGACGCTTTTATTTTAAT-G 1999 Query 364499 AGATGGCATT-TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATG 364557 |||| | || ||| |||| | || | |||||| | |||||||||||||| Sbjct 1998 AGATACCCTTATGAAAGTGAGAACGCGTTTCTTTTGAATAAGCAAATCTTTGAAACAATT 1939 Query 364558 TATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACT 364617 ||||||| |||| || || ||||| ||||| ||| ||| || || Sbjct 1938 TATTTTGGCGCATTGGAGGCAAGTTGTGAGCTGGCAGAAAAATTTGGACCATATGAAACA 1879 Query 364618 TATGAGGG--GTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 ||||| || ||||| || || |||||| | | |||| |||| | ||| || || Sbjct 1878 TATGACGGAAGTCCCGTC---AGCAAGGGAATACTGCAGTATGATATGTGGGGAGTAACT 1822 Query 364675 CC-----ATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 || || ||| ||| | | | ||| || || | ||||| |||||| Sbjct 1821 CCTACAAATTTGTGGGATTGGATT--GAT---TTAAAAAATAAAATAAAGAAATATGGTA 1767 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 | ||||| || || || || ||||| || || || || || ||||| | |||| Sbjct 1766 TAAGGAACTCTCTACTTGTGGCACCAATGCCAACAGCATCCACCGCGCAGATTTTGGGAA 1707 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 | ||||| | || ||||||| ||| ||| |||| | || || || | || || | Sbjct 1706 ATAACGAATCTTTTGAACCGTATACGTCAAATATTTACACGCGGCGAGTATTGTCGGGCG 1647 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 |||||| || ||||| | || || | | ||||| |||| | | |||||| || Sbjct 1646 AATTTCAAGTGGTTAACCATCACTTACTAAGAGATCTAACCGAACTAGATTTGTGGGATG 1587 Query 364910 ACAGCATGAAGAACTATATCA----TCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGA 364965 | ||||| ||| | || | | |||| |||||| | || || || | | Sbjct 1586 AACAAATGAAAAACGAAATAATATCTAGCCG----TGGTTCCATTCAAAATATCGAAAGT 1531 Query 364966 TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTC 365025 | ||| || | | | | |||||||||| || |||||||| || | | | Sbjct 1530 ATACCACAAAACATACGGGATCTTTACAAAACTGTTTGGGAAATATCAGTTAAATCAACA 1471 Query 365026 ATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC 365085 ||| ||||| || ||| | || || |||||| ||| |||||||| ||||| ||||| Sbjct 1470 ATTTTAATGGCTGCTGATAGAGGAGCATTTATCGATCAAAGCCAGTCATTTAA--TATTC 1413 Query 365086 ATG--ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||| |||||| | | ||| | ||||| || ||||||| | ||||||| | | Sbjct 1412 ATGTTGGAGAGCCAAATTATGGGAAGTTAACATCGATTCATTTCTTTGCGTGGAAAGCTG 1353 Query 365144 GTCTTAAGACAGG 365156 |||| || || || Sbjct 1352 GTCTAAAAACTGG 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302799753735812