Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3053 105 6e-18 seq15048 104 2e-17 >seq3053 Length=25279 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||||||||| | ||||||||||| | || || || | || ||| | || ||||| Sbjct 9958 ACAAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAAC 10017 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | ||||| |||||| | || ||| |||||| |||||||| || || ||||| | Sbjct 10018 CTTCGGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAG 10077 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGA 24163 ||||||| | || |||| | || |||||| | |||||| ||| | | ||| ||| Sbjct 10078 ATCAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTC--CGA 10135 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||||| || || ||| | ||| Sbjct 10136 TTATAACATTCAAAAGGAGTCAACATTACAT 10166 >seq15048 Length=4365 Score = 104 bits (114), Expect = 2e-17 Identities = 443/687 (64%), Gaps = 16/687 (2%) Strand=Plus/Plus Query 132576 TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAA 132635 |||||||| || || ||||| || || |||| || ||||| || ||||||||| | Sbjct 2001 TTAAAATA---AAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCA 2057 Query 132636 AATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGAT 132695 |||||||| || ||| | | |||||| | ||| || ||||||||||| | || Sbjct 2058 AATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAAT 2117 Query 132696 TGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTAGTCCTTT 132755 | || ||||| | | | | || | | || || |||||||||| |||| ||| Sbjct 2118 TCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTA-TCC--- 2173 Query 132756 TGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTC-TTTAT 132812 | || || ||||| ||| | |||||||| || | ||||| |||||| |||| | | Sbjct 2174 -GCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGG 2232 Query 132813 TATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttt 132872 | || ||| | || ||||| | ||| | ||||||| | ||| || | ||||| Sbjct 2233 TGCCG-AATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTT 2291 Query 132873 tttGATTG-TTTTTCTCGTTTACGTTATCTTTATGCAACATGTACGGACCTCCGGTTTCG 132931 ||| ||| ||||||| | | | |||||| | | ||| || || || ||||| Sbjct 2292 GTTGGTTGCTTTTTCTATTGCATG-AATCTTTGTATAGCATATATGGGGTACCTGTTTCC 2350 Query 132932 ACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCCAAAATTTGTTCTTTAAACTTG 132991 || || || ||||| ||| || | || |||| | | | Sbjct 2351 ACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGGGCTTTTACTT-TTCTATTCGCGCG 2409 Query 132992 -CCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAA 133050 |||| |||| || |||| || || ||||||||| || | || | ||| Sbjct 2410 TCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAA 2469 Query 133051 ACCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCAT 133110 || ||||||| || ||| ||||| | ||||| | ||| || || | |||||| Sbjct 2470 GCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCAT 2529 Query 133111 GAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCC 133170 ||||| || |||||| ||| |||||||||| ||||| | |||||| ||| Sbjct 2530 AAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCC 2589 Query 133171 CATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATAC 133230 | | ||| || || |||||||| |||||| || | ||||||||||| | || | Sbjct 2590 CGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGAT 2649 Query 133231 GGCCAAAGCGCCTTTCCTTTTACCTCC 133257 || ||||| || |||||| || || Sbjct 2650 TGCAAAAGCTCCAGGCCTTTTTCCGCC 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429762215300730