Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq15048 136 4e-27 seq31959 127 2e-24 seq3053 98.7 9e-16 seq7146 96.9 3e-15 >seq15048 Length=4365 Score = 136 bits (150), Expect = 4e-27 Identities = 720/1131 (64%), Gaps = 34/1131 (3%) Strand=Plus/Plus Query 145048 TAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGA 145107 ||||| || || || || ||||| ||||| | ||| || || ||| || | || || Sbjct 1621 TAAGTGATGGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGA 1680 Query 145108 CGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCAT 145167 ||| | ||||||||||| |||||||| |||| || || ||||| | ||| || ||||| Sbjct 1681 CGTATACGGTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCAT 1740 Query 145168 GTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACC 145227 ||||| | || || || | | || | ||||| || | | |||| | Sbjct 1741 TGGTGCCACAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAAT 1800 Query 145228 CCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||||||| | || || | || ||||||| || ||||||| || |||| ||| Sbjct 1801 CCAATCCCACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCT 1860 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGCAACTC 145345 | |||| || || | | | | | | || |||| |||| || ||||| ||||| Sbjct 1861 GACGGGACTTCCGTCATATG--TTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTT 1918 Query 145346 GCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA 145405 ||||||| ||||| ||||||||||| || |||||| | || | || | ||| | Sbjct 1919 GCCTCCAATGCGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTC 1978 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 || || || || || | || | | |||||| ||||| ||||| || | || | Sbjct 1979 TCACTTTCATAAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATA 2038 Query 145466 CCGATGGGCCGATGTTTCATGTT-GCTCAT----CCTCGCCGACTCGATAGGATATCGAT 145520 || || || | |||| || || | | | | ||| | | |||| ||| || Sbjct 2039 CCAATAGGTCTATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATA--ATA---AT 2093 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 | || || |||||||| || || |||| ||||| | | || |||| Sbjct 2094 TTACATCAATTATTTTATTTAAATTCTTGGTGACTATTTTTGTGACCTCTTTTAATTTTT 2153 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||||||||| || | | || | |||| | |||| | || ||||| || | | Sbjct 2154 TAAAGTCAAA--GA-CTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGT 2210 Query 145641 TACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 | ||||| || |||| || || | || |||| || || || | || | ||| || Sbjct 2211 TGCAAACGGCTATCTCATCTGGTGCCG-AATATTCAACAATTTCAGTACATAGATTACTG 2269 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 ||||| || || || || ||||| || || ||||| || ||||| | || ||||| ||| Sbjct 2270 CATTTTATAGTACCGAGGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGC 2329 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAA--GTCCTG 145815 || || || || || ||||| || | ||| | || |||| ||| | ||| Sbjct 2330 ATATATGGGGTACCTGTTTCCACTTGTGCCTCTATAATCGCAAAC----CAAAGGGACTG 2385 Query 145816 CGCACGCAC-CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 || || | || | | ||| ||||||| || ||||| || | ||||| Sbjct 2386 GGCTTTTACTTTTCTATTCG-CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAA 2444 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 | | ||||| | || || ||| |||||||||| || ||||| || ||||| Sbjct 2445 ATTCCGAACCCCAAACTTCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAAT 2504 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 | |||| || | || || | |||||||||||| || | ||||| || || | || | Sbjct 2505 CTTCGTTAGCTTCAACTCGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAAT 2564 Query 145995 CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATG 146053 | || ||| | || || ||| ||||| ||| |||| || || | | | || Sbjct 2565 CACGAGCTCTATGTTCTTCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTC-AAAAATA 2623 Query 146054 TCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGG 146110 || | |||||| || || | |||| || | ||||| | ||| ||| || ||| Sbjct 2624 TCAGAGTGCCAAGGCTCTAAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGG 2683 Query 146111 TCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCG 146161 || |||| || ||| ||||| || || | | ||| ||| | | |||| Sbjct 2684 TCAACGTAGCGGGCCACATTGTTGAAAACTCTTAGCATTGGCACCAGGCCG 2734 >seq31959 Length=2257 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 51800 TGGCCTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGT 51859 ||||||| |||||||| || ||||| | || ||||| || | |||| |||||||| | Sbjct 784 TGGCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCT 843 Query 51860 GTTTGCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGA 51919 ||||| || || || ||||| ||||||||| |||| |||||| || ||||||||| Sbjct 844 CCTTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGA 903 Query 51920 ACTCGTGCACGTGAAAGCCGTGCAGTCC 51947 |||||||||| || ||||||||||| || Sbjct 904 ACTCGTGCACATGGAAGCCGTGCAGCCC 931 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 51613 ATACCGATAATGCCGCAGCCGAGTCGTCCGCCCGAATTGCCGGTCGTCTTGCTGAGCGGG 51672 || ||||| | |||||||||| || | || | ||||||||| |||||||| ||| | Sbjct 509 ATGCCGATCACACCGCAGCCGACGCGGGCCCCAGCATTGCCGGTGGTCTTGCTCAGCTCG 568 Query 51673 TGATCGGTTAGGCCTAGGTCGTCGCGATCGGCGTGCACGACCAAACTCCTACCGATCACA 51732 || || ||| ||||||||| |||||||||||||||||| | | ||||| | Sbjct 569 TGGCCGCCCTTGCCCAGGTCGTCGGGATCGGCGTGCACGACCATGGTGCGCCCGATGATG 628 Query 51733 CTGTACTCACCGAACAGGGACAT 51755 |||| | |||||||| || || Sbjct 629 CTGTTGGCCCCGAACAGCGAGAT 651 >seq3053 Length=25279 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||||| || ||||||||||||||||| |||||| | Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||||| || || | |||| ||| || || || ||||| Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | || || | | ||| | || || | | |||| Sbjct 10069 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || |||||||| || |||||||| Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 >seq7146 Length=6253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 278/425 (65%), Gaps = 2/425 (0%) Strand=Plus/Plus Query 45870 GCACGTGTTAGCtttttttGCGGCCGCCGACAGCATTGTCAACATTAATTTGATCGAGTA 45929 ||||||| | || || || || ||| |||| ||||||||||| ||| || | ||| Sbjct 5318 GCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTGGTGGAG-C 5376 Query 45930 CATGCAG-CAGAACGTGCCGGAGCTAGAGGCGCAATACTTTTACAACCAGCAAGTGCTCA 45988 | ||| || | |||| | | |||||||| | ||| ||| | || | || Sbjct 5377 GTTTCAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCA 5436 Query 45989 TCGAGTGCGTGCACACGGAGATGTACAATTTGTTAATTCACCAGTTGATTTCGGACGAAC 46048 | ||| || ||| |||||||||||| | | ||| || | || ||| | Sbjct 5437 TGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAGGGATCCGC 5496 Query 46049 ACGAGCGCGACACGCTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCG 46108 | |||| ||| ||| | |||||| | ||| ||||| || ||||| ||| Sbjct 5497 ATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAAGAAGGCCG 5556 Query 46109 ACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCT 46168 ||||||||||| |||||| | | | || | |||| ||||| || | || | Sbjct 5557 ACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAACTTCGGTGAGCGCATCATTGCGT 5616 Query 46169 TTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAA 46228 | || || |||||| | || || || |||||||| ||| | ||||| | | || | Sbjct 5617 TCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGGCTGAAGA 5676 Query 46229 CCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCC 46288 ||| ||||||||||||| || || ||||||| |||| || ||||||||||||| Sbjct 5677 AGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGACGAGGGCC 5736 Query 46289 TGCAT 46293 ||||| Sbjct 5737 TGCAT 5741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471817115293440