Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3053 87.8 1e-12 >seq3053 Length=25279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| | || ||||||||||| ||||| || |||| || || | || Sbjct 10174 AGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCT 10115 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || ||||| || || ||| |||| || || ||||| || ||| | ||||||||||| Sbjct 10114 TCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC 10055 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||| || || || | |||||||| Sbjct 10054 TGAATCTTGGCT--TTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGG 9997 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 | || || || || ||||| ||||| ||||||||||||| Sbjct 9996 TCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTGT 9958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404924259126340