Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6153 158 8e-34 seq14288 140 2e-28 seq10190 140 2e-28 seq3053 132 3e-26 >seq6153 Length=7083 Score = 158 bits (174), Expect = 8e-34 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 6157 CCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAA 6216 |||| ||||||||| | ||||| || || ||||| | ||| |||||||||||||||| Sbjct 2702 CCACCATGGGGACCGTCAACGTCAACCGCAATGTCACCGACATTTTCTACCGCTACAAAA 2643 Query 6217 TGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCA 6276 |||||||| || |||||||||||||| ||||| ||||| || || || ||||| || | Sbjct 2642 TGCCGCGCCTCCAGGCCAAGGTCGAGGGCAAGGGCAACGGCATCAAGACTGTCATCGTGA 2583 Query 6277 ACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCG 6336 ||||| | || || || || |||| || || |||||||| ||||| || || || | Sbjct 2582 ACATGGCGGACGTGGCCCGAGCCATCGGCCGTCCGGCCACCTATCCGACCAAGTACTTTG 2523 Query 6337 GGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | ||||| | ||||| || || || ||||| |||| Sbjct 2522 GCTGCGAGTTGGGCGCCCAAACCCAATTTGACTACAA 2486 Score = 111 bits (122), Expect = 1e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || ||||| ||||| || || || ||||| | | ||||| |||||||| || || ||| Sbjct 2415 AATGAGCGTTTCATTGTGAATGGTTCGCACGATGCCGCCAAACTGCAGGATTTGCTCGAC 2356 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || || ||||| ||||| || | ||| ||||| ||||||||||||| | | Sbjct 2355 GGGTTCATACGGAAGTTCGTGCTCTGCCCGGAGTGCGACAACCCGGAGACCGTGTTGTCG 2296 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || || |||||| | |||||||| |||| |||||| || || || | ||| || Sbjct 2295 GTTTCGGCCAAGAATCAGACCATCTCGCAGGCCTGCAAGGCTTGTGGGTTCCACGG 2240 >seq14288 Length=1570 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 443 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 384 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 383 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 349 >seq10190 Length=1621 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1241 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 1182 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1181 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1147 >seq3053 Length=25279 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | |||| ||| | || |||||||||||| || ||||| || Sbjct 10190 ACCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGA 10131 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| |||| | || |||||||| ||||| ||||| ||||| ||||||||||| | || Sbjct 10130 CAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGG 10071 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||||||| ||| || |||||||||| || || || | ||| || Sbjct 10070 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || || || || ||||| | |||||| || || |||||||| || Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334811810782946