Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15048 623 1e-173 >seq15048 Length=4365 Score = 623 bits (690), Expect = 1e-173 Identities = 1280/1893 (68%), Gaps = 25/1893 (1%) Strand=Plus/Plus Query 61829 TTTATT-TTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 61887 |||||| ||| ||||| | ||||||||||||| | | ||| ||||| || | || Sbjct 1270 TTTATTGTTACTTTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAG 1329 Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 || |||||||| ||||||||||| |||| | | ||||| || |||| || Sbjct 1330 GTAATACATTCCAGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTT 1389 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 |||| | || ||| | | ||| ||||| | || || ||||||||||| || ||||| Sbjct 1390 CCCATAATTTGGCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCC 1449 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 62067 || || ||||||||| || | | || || |||||||||| |||||| |||| Sbjct 1450 TCTATCAGCAGCCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAG 1509 Query 62068 -TCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAA 62123 || | || | | || ||| | || |||| |||||||| |||| | || | Sbjct 1510 ATCCCGTA-TGTTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTA 1568 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | || || || | |||| ||| || | | ||||||| | |||| || | || Sbjct 1569 TTTCGTTTTTCATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGAT 1628 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 | ||||| ||||||||||| || |||||||||| ||| ||||||||||| ||||||| Sbjct 1629 GGTTAACCACTTGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACG 1688 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | ||| || |||||||||||||| || || || ||||| || ||||| ||||||| Sbjct 1689 GTTCAAAAGATTCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCA 1748 Query 62304 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCC 62363 | | || | || || | ||| ||| | | ||||||| ||||| | ||||| || Sbjct 1749 CAAGTAGAGAGTTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCC 1808 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62423 | | || | || || || || || || || ||| || Sbjct 1809 ACAAATTTGTAGGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGAC 1868 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 ||| ||||||| || |||||||| || || || || |||||||| ||||| |||| Sbjct 1869 TTCCGTCATATGTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATG 1928 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 | || ||||||| ||||| ||||| | |||||| | | ||| | | || ||| Sbjct 1929 CGCCAAAATAAATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCAT 1988 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 | || || | | | |||||| ||||| || | ||||||||||||||||| ||||||| Sbjct 1989 AAGGGTATCTCATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTC 2048 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 |||||| | ||| || ||| ||||| || | ||||||||||| | ||| || |||| Sbjct 2049 TATGTCGCAAATTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTT 2108 Query 62664 TATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 |||| | ||| || || ||| | ||||| || || | ||| ||| ||||| Sbjct 2109 TATTTAAATTCTTGGTGACTATTTTTGTGACC---TCTTTTAATTTTTTAAAGTCAAAGA 2165 Query 62721 GCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 62777 ||| | | |||||||| || || |||| || || || || |||||||||| || Sbjct 2166 CTTTATCCGCTGTCACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCT 2225 Query 62778 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 ||| | ||| ||||| | || ||||| || |||||||| || || || || || | Sbjct 2226 CATCTGGTGCCGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGA 2285 Query 62838 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 62897 |||||||| || || ||| | || || | ||| || || || || |||| ||||| | Sbjct 2286 GGTTTTGTTGGTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTG 2345 Query 62898 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTA-TTATAGATTT 62955 |||| | || | ||||||||||| ||| | | ||| | || |||| || | ||| Sbjct 2346 TTTCCACTTGTGCCTCTATAATCGCAAACCAAAGGGACTGG-GCTTTTACTTTTCTATTC 2404 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 | | | | ||||||| ||| | | |||||| || || || |||||||| Sbjct 2405 G---CGCGTCCCTCTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACT 2461 Query 63014 TTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | | || |||||||| | | || ||||| | ||||| ||| ||| | | | ||| Sbjct 2462 TCATGCAAGCCAGGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACT 2521 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63133 ||||||||||| | ||| |||||||| | ||| ||||| ||| | | ||||||||| Sbjct 2522 CGTTTCATAAACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCT 2581 Query 63134 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63193 || || || || || || || | ||| | ||| | | ||||||||| ||||| || || Sbjct 2582 TCCTTGCCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCT 2641 Query 63194 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63253 ||||| || || | | ||||||||| ||| ||||| || || | ||| | || Sbjct 2642 AAGTAGATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACA 2701 Query 63254 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATA 63313 || || ||||||| | |||||| | | || || || || ||||| || ||||| ||| Sbjct 2702 TTGTTGAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATA 2761 Query 63314 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | | || | || || || | || || || || || || || |||||| Sbjct 2762 GATGTGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGAT 2821 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 63433 || | |||||| ||| | | | | | || || || || ||| | | ||| || Sbjct 2822 ATCATAGCGCATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTA 2881 Query 63434 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63493 ||||| || || || | ||| | ||| | ||| | ||| ||| | || || || Sbjct 2882 AGTAGGAAGCAAGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGAT 2941 Query 63494 GCGTGAGTAAACCATTTTTCAGAAAG-TAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 || || ||||| || |||| || || ||| ||||| || ||||| || || |||||||| Sbjct 2942 GCATGCGTAAAAAATCTTTCCGACAGATAG-TTGTAGGTTTCAATTGCGGAATCTATATC 3000 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 |||||| |||| | || | ||| ||||||||||||||||||||| |||| || Sbjct 3001 ATCACCATGAATACCTATAGACACCCTCATCAACATGTGCTGAGGTCTTTCAGCGATTTT 3060 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | ||| |||||||| || || || ||| | |||||||| |||||||| ||||| Sbjct 3061 GCCGTTGATTTTCAATAAATAAGACCGTTCAAGTGTTTTAAATCCAAAATAATTGTAGCC 3120 Query 63673 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || || || || || ||| | ||||| || Sbjct 3121 AAAATCACGATCATATATGATAGCTGAGTTCAG 3153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633369312013600