Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3053 113 4e-20 seq5502 89.7 4e-13 >seq3053 Length=25279 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 9962 AATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCTTC 10021 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| |||| || || | ||| |||||||| || ||||| || || | Sbjct 10022 GGACACAATCGAGAATGTGAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCTCCAGATC 10080 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || || ||||||||||||| || || || |||||| | Sbjct 10081 AACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTATA 10140 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| || || || ||||| | || || Sbjct 10141 ACATTCAAAAGGAGTCAACATTACATCTGGTTCT 10174 >seq5502 Length=7310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 51178 GTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCG 51237 |||||||| | |||||||| ||||||||||| |||| | | |||||||| ||||||||| Sbjct 5979 GTCCATTCGAGTATTTTCTTCGCCCAGTACATACGCAGGAAGCCGTGCATTTTGCCCTCG 5920 Query 51238 CAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 | |||||| ||| || | |||||||| |||||||| || Sbjct 5919 CGCACCAGCTGCAATTGCGCGGCGTTCCACAGATCGTCGTGGGT 5876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433152844218290