Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq28657 125 3e-24 seq6146 107 7e-19 >seq28657 Length=2955 Score = 125 bits (138), Expect = 3e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 49835 TTTCTAATAGTGTAATATTTTCTTACATCACTGCTTGAAAATGCTTCTTGAATAACAGCT 49894 ||||| || |||||||||||| | || ||||| || ||||| || ||||| ||||| ||| Sbjct 172 TTTCTTATTGTGTAATATTTTTTAACTTCACTACTAGAAAAAGCCTCTTGTATAACCGCT 113 Query 49895 TCTATATAAAGGCGGTCAATGCTAAGATTATCAGAGTTTGATTCAGTAACGCGTATGGCA 49954 |||||||| | || || ||||| | || | |||||| | ||||| || ||||| | | Sbjct 112 TCTATATACAATCGATCTATGCTCATGTTTTGAGAGTTAGCCTCAGTGACTCGTATAGAA 53 Query 49955 GCTAATTCAACATTATATAAATTAAGAATGTCGAGGATGTTATTTCTCACAT 50006 || | ||||||||||| ||||| | || || | || |||||||| |||| Sbjct 52 GCCACATCAACATTATAAAAATTTAATATATCCAATATATTATTTCTTACAT 1 Score = 111 bits (122), Expect = 6e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 49230 CCAAAGTCAGATAGCATGGCCTCATTTCTGTTTGATATCATAATGTTATTAGGTTTTATA 49289 ||||| |||| ||||| || ||||| | || || | ||| || || || || |||||| Sbjct 838 CCAAAATCAGCAAGCATTGCTTCATTGCGATTAGAAAGCATTATATTGTTTGGCTTTATA 779 Query 49290 TCAAAATGCATAAGACCTTTTGAGTGTATATGATAAAGTCCACTTAAAAATTGAATGGAA 49349 |||||||| ||||| |||| |||||||||| ||| || | || |||||| || | Sbjct 778 TCAAAATGAATAAGCTTATTTGTATGTATATGATTAAGACCGCCTAGAAATTGTATTGCG 719 Query 49350 TACCGTATTATCTCCCTGCTTGTAAGATTAttttttttCATTAATTGGTTTAGCGAACCA 49409 || || || || |||| || || || | | | ||||| ||| |||| || || Sbjct 718 TAACGAATAATTTCCCGTGGAGTTAGGTTCTCTATACTCATTTTTTGATTTAAAGACCCG 659 Query 49410 TTATGATAAAATGGCATGGCTATATA 49435 || | |||||||||||| |||||||| Sbjct 658 TTTTTATAAAATGGCATTGCTATATA 633 >seq6146 Length=11763 Score = 107 bits (118), Expect = 7e-19 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38346 TTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGGG 38405 ||||||| ||||| | || || || | ||| |||||||| ||||||||| | | Sbjct 9568 TTATCTGAAGAAGGGGTAGCCCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCT 9509 Query 38406 GGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGAG 38465 ||| | ||||| ||||||||||||||||||||| | ||||| ||||||||||| || Sbjct 9508 GGAATCATGGCTGTGTATAATAAACACGACTGGATTAGTGAACAAAAAGATGCGTACGAA 9449 Query 38466 TTGTATGCTGATAAAATTTTCTGGCAC 38492 | |||| |||||| | ||||||||| Sbjct 9448 ATACATGCAGATAAATTATTCTGGCAC 9422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192564129458400