Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7146 168 7e-37 seq19825 122 1e-22 seq5715 122 1e-22 seq5221 122 1e-22 seq25450 84.2 2e-11 >seq7146 Length=6253 Score = 168 bits (186), Expect = 7e-37 Identities = 300/438 (68%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 |||| | ||| || || || ||| | || ||||| ||||| |||||||| ||| || Sbjct 5763 ACATCAGGCAGGCGAAATCACAATGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGA 5704 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 | || | || || | || || || ||||| ||||| || || || || ||||| || | Sbjct 5703 AGGTGAGGCCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCCG 5644 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | || || || || || ||||| || || || | || || || | || || || || | Sbjct 5643 AGAAGAAAATGCCCTCGACGGCGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACT 5584 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | ||||||| | ||||| ||||| || ||||| | || | |||||||| Sbjct 5583 TCGAGGAGATCCATGCCATCGCCCAGTCGGCCTTCTTCTTGACCGCCGGCAATGTTTCGA 5524 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 || || || ||| | || |||| | || ||| | ||||| || || || | | Sbjct 5523 CCGCATTGAACAGGAAGTCCCGCTGATGCGGATCCCTGATGTAGGTGTCAATCAGAATGC 5464 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||||| || || |||||||||||||| || || ||||| |||||||| || | || | Sbjct 5463 TGTACATCTCCGAGTGGACATTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 5404 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || | ||||| ||||| || | ||| || ||||| || ||||| || ||||||| Sbjct 5403 CTGTCACTTGCACCTCTTGGCTGAAACGCTCCACCAGATTCTCGTTGACAATGCCATCGG 5344 Query 93504 ATGCTGCaaaaaaaGCCA 93521 | || || || || |||| Sbjct 5343 AGGCGGCGAAGAAGGCCA 5326 >seq19825 Length=1746 Score = 122 bits (134), Expect = 1e-22 Identities = 84/93 (90%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 219 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 278 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA-TTATT 126354 ||||||||||||||||||||||||||| ||||| Sbjct 279 GTGGGTTCGAACCCCACACCTGACAAACTTATT 311 >seq5715 Length=14625 Score = 122 bits (134), Expect = 1e-22 Identities = 94/107 (88%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 11862 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 11803 Query 126324 TGGGTTCGAACCCCACACCTGACAAA-TTATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||| ||||| || || ||||||| Sbjct 11802 TGGGTTCGAACCCCACACCTGACAAACTTATT-TTAGA--TTTTGTT 11759 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 11542 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 11483 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 11482 TGGGTTCGAACCCCACACCTGACAAA 11457 >seq5221 Length=7851 Score = 122 bits (134), Expect = 1e-22 Identities = 89/101 (88%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| Sbjct 6957 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGCG 7016 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 |||||||||||||||||||||||||||| | | ||||| || Sbjct 7017 TGGGTTCGAACCCCACACCTGACAAATT-TGAATGGAAATT 7056 >seq25450 Length=1608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 162721 AACAAACATACATATaaaaaaaTCAGAATTACCTCTTGTGAGAATCGAACTCACGACAAC 162780 |||||| ||| || ||||||| || || |||| |||||| || ||||||||||| | Sbjct 1394 AACAAAAATATTTACAAAAAAAATTGA-TTGCCTCCTGTGAGGATTGAACTCACGACCCC 1336 Query 162781 CGGCGTATAAGACCGATGCTCTAACCACTGAGCTAAAGAGGCT 162823 || || |||||| |||||| |||||||||||||||||||| Sbjct 1335 TGGTTTACAAGACCAGTGCTCT-ACCACTGAGCTAAAGAGGCT 1294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556629939433840