Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq15048 251 6e-62 seq3053 114 1e-20 >seq15048 Length=4365 Score = 251 bits (278), Expect = 6e-62 Identities = 1009/1567 (64%), Gaps = 34/1567 (2%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || || |||| ||| || | |||||| || || || | | || ||||| || Sbjct 1283 TTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCCA 1342 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | ||| |||||| | | ||||||| || ||| | || | || Sbjct 1343 GTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGATGTTAACTTCCCATAATTTGGC 1402 Query 128899 TGACTCaaaaa--aaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 | ||| || | |||||||||||| || |||||||| ||||| | || | ||| |||| Sbjct 1403 T--CTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAG 1460 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| ||| ||| ||| |||||||| || ||||||||||| || | | || Sbjct 1461 CCATTAAAATTGTTGATTTAACTGATATTTCCCAAACAGTTTTGTAAAGATCCCGTATGT 1520 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076 || |||||| ||| || || || | | || | | | || |||| |||| || Sbjct 1521 TTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTCA 1580 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATC-GTCGGTCAAGTATTTGTTTATTACT 129135 | ||||| | |||||| |||| | | | ||| | || |||| | ||| | ||| Sbjct 1581 TTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGT-AAGTGATGGTTAACCACT 1639 Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||||| || |||| ||| || ||||| |||||| || || |||| ||||| ||| Sbjct 1640 TGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGAT 1699 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAG 129255 || || || || || || || || || | || || ||||| ||||| || ||| Sbjct 1700 TCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAG 1759 Query 129256 TTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTG 129315 || | | ||| | | || || | |||||||| | |||| ||||||| ||| Sbjct 1760 TTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTGTA 1819 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAG 129375 || || ||||| || || |||| ||| ||| ||| ||||||| || Sbjct 1820 GGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATAT 1879 Query 129376 GAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAA 129435 | || | || | || ||||| || ||||| || |||||||||||||||||| Sbjct 1880 GTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATAA 1939 Query 129436 ATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGC 129495 |||||||| |||| | ||||| | || | || ||||| || || | | Sbjct 1940 ATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCTC 1999 Query 129496 AACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTA 129555 | | ||| | |||||||| ||||||| ||| | ||| || |||| |||| | Sbjct 2000 ATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAAA 2059 Query 129556 TTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTC 129615 || ||||||| ||| || ||||| || || | || || ||||| ||||||||| Sbjct 2060 TTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAATTC 2119 Query 129616 TTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT-CGAT 129674 ||| || ||||| || || | |||||| ||| ||| || | || || || | Sbjct 2120 TTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAA---GTCAAAGACTTTATCCGCT 2176 Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734 ||| ||||| ||| | | |||||| || | ||||| ||||| | || | | | Sbjct 2177 GTC-ACAAACATATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGGTGC 2235 Query 129735 ACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 || || |||||||| | || | |||||| ||| || || || | | | ||| Sbjct 2236 CGAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTG 2295 Query 129795 ATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || ||||| | ||||| | ||||||||| | ||| || || || || ||||| ||||| Sbjct 2296 GTTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTG 2355 Query 129855 CGTTTCGACAATGGTCCTGAACAA---GTCTCGAGCCTTGATCTGTCT-TACAAATTTGC 129910 | || | ||| | | | ||| | || | || || | | ||| | | | | Sbjct 2356 TGCCTCTATAATCG--CAAACCAAAGGGACT-GGGCTTTTACTTTTCTATTCGCGCGTCC 2412 Query 129911 CACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT-CGAGC 129969 | | |||||| ||| |||||| |||||||| || || || | | ||| Sbjct 2413 CTC-TTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAAGC 2471 Query 129970 AACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATA 130029 | || | | | || ||||| | ||| | | | ||||| |||||||||||| Sbjct 2472 CA-GGACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATA 2530 Query 130030 AACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGC----TTTTCTATCCTCGGC 130085 ||||||||||| | ||||| || || || ||||| || || | |||| |||| | Sbjct 2531 AACAAATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCT-TCCTTG-- 2587 Query 130086 ACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145 ||| |||| || | || | || || |||| || | |||||| || || | || Sbjct 2588 -CCCGTGTTTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTA 2646 Query 130146 AATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTT 130202 ||||| | || || || ||| ||| ||||||||||||| ||| | ||||||| Sbjct 2647 GATTGCAAAAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTT 2706 Query 130203 GTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCA-ATGAAAC 130261 | | |||| | ||||| | ||| ||||| | || || || || | || | || | Sbjct 2707 GAAAACTCTTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTC-CTGATATAGATG 2765 Query 130262 TGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCA 130321 |||| ||| || | | |||||| ||| || || || || | |||| ||||||| Sbjct 2766 TGCCTTTAGCTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATATCA 2825 Query 130322 ACGCGCA 130328 ||||| Sbjct 2826 TAGCGCA 2832 >seq3053 Length=25279 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| | || || || || |||| | || || ||| | Sbjct 9960 AAAATGCAGATCTTTGTAAAAACCCTCACGGGGAAGACCATCACCTTAGAGGTCGAACCT 10019 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || ||||| ||||| ||||| ||||| || ||| Sbjct 10020 TCGGACACAATCGAGAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGAT 10079 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || ||||| || || || ||||| ||| || || | |||||||| Sbjct 10080 CAACAACGTCTAATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACATTGTCCGATTAT 10139 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || ||||| | ||| | || | || || ||| Sbjct 10140 AACATTCAAAAGGAGTCAACATTACATCTGGTTCTTCGTCTTCGTGGTGGT 10190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419558341482790