Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9782 116 8e-21 seq22592 95.1 2e-14 seq19811 89.7 1e-12 seq3209 89.7 1e-12 seq22048 87.8 4e-12 seq3800 87.8 4e-12 >seq9782 Length=20874 Score = 116 bits (128), Expect = 8e-21 Identities = 226/334 (68%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 ||| || |||||| | ||||||| ||| ||||||| || || ||| | | || | Sbjct 12247 GCGCTCGATTCCCTGTCTGGTGGACGGCTTCAAGCCGGGCCAACGCAAGGTGATGTTCAC 12188 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 |||||||| ||| | || | ||||| || ||||| || |||| || | Sbjct 12187 GTGCTTCAAGCGCAACGACAAGCGCGAGGTGAAGGTGGCCCAGTTGTCCGGTTCGGTGGC 12128 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 |||||| || | |||||||||||| ||| | ||||| ||||||| |||| Sbjct 12127 CGAAATGTCCGCCTACCATCACGGCGAGGTGTCCCTGCAAATGACCATTGTGAATTTGGC 12068 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804 ||| ||||||||||| |||||||| ||||||||| || ||||||||| ||| | Sbjct 12067 CCAGAACTATGTGGGCTCGAACAACATCAACTTGCTGGAGCCGCGCGGTCAGTTCGGTAC 12008 Query 218805 TCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCC 218864 |||||| || || ||||| ||||| ||| | || || || || | |||| || Sbjct 12007 TCGTCTGAACGGCGGCAAGGACAGTGCCAGTGCTCGTTACATTTTCACGCTGATGTCCCC 11948 Query 218865 CGTGACGCGCCAGGTGTTCAATCAGGCCGATGAT 218898 ||||||||| | ||| ||| | |||||| Sbjct 11947 GTTGACGCGCCTCATCTTCCATCCGCTGGATGAT 11914 >seq22592 Length=1504 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1418 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1359 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1358 AGCCCCACGTTGGGC 1344 >seq19811 Length=1482 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1326 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1385 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1386 CCCACGTTGGGC 1397 >seq3209 Length=1497 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 157 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 98 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 97 CCCACGTTGGGC 86 >seq22048 Length=3709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 436 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 377 Query 142565 CCACATCGGGC 142575 |||| | |||| Sbjct 376 CCACGTTGGGC 366 >seq3800 Length=2203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 1706 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 1765 Query 142113 CCCGCCAGAGA 142123 ||||| || || Sbjct 1766 CCCGCAAGGGA 1776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027400031672606