Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3053 174 3e-38 seq9782 104 4e-17 seq9388 98.7 2e-15 >seq3053 Length=25279 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| |||| || ||||| ||||| |||||||||||||| Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||||||||| ||||| || || || || || | |||||| || || ||| Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| || || || |||||| ||||| | | ||| || Sbjct 10069 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACC 10010 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||||||||| || ||||||||||| || || || ||||||||| || Sbjct 10009 TCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTTG 9959 >seq9782 Length=20874 Score = 104 bits (114), Expect = 4e-17 Identities = 201/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 176108 TCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCC 176167 ||| ||||||| || | ||| ||| | |||| || ||| |||||| || | ||| Sbjct 11827 TCCGTTCACCAAGACCATCGGTATGATCGGAATGTACCATTGCGGTTCGATTTTCTGGCC 11886 Query 176168 GTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTT 176227 || ||| | ||| |||||| | || || | ||||| || || || Sbjct 11887 ATCGTCCACTTCGTATGTCAGCAAGGGATCATCCAGCGGATGGAAGATGAGGCGCGTCAA 11946 Query 176228 GGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCG 176287 ||||||| | ||||| || || | |||| |||||||||||||| |||| || || Sbjct 11947 CGGGGACATCAGCGTGAAAATGTAACGAGCACTGGCACTGTCCTTGCCGCCGTTCAGACG 12006 Query 176288 GGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTG 176347 | |||||| || ||||| || ||||| |||||||| ||||| ||||| |||| || Sbjct 12007 AGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAGCCCACATAGTTCTG 12066 Query 176348 GGCC--ATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGG 176400 |||| |||| || |||| || || ||| |||||||||| || ||| ||| Sbjct 12067 GGCCAAATTC--ACAATGGTCATTTGCAGGGACACCTCGCCGTGATGGTAGGCGG 12119 >seq9388 Length=2963 Score = 98.7 bits (108), Expect = 2e-15 Identities = 180/261 (69%), Gaps = 22/261 (8%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| ||||||| || || ||||||||| ||||||||||| ||||| || | Sbjct 506 CTGCAGCATCATCCACATGGCCTCCACATAGTCCATGGCATGGCCCCAGTCGCGTTTCGA 565 Query 268306 GTCCATGTTCCC------GAGGAACAGGCATTTCTGCTTGCC---GAGCTTCACGCGTGC 268356 |||| ||| || || |||| || ||| ||| || |||| | Sbjct 566 ATCCAAGTTGCCCAATTCGAAGAACTC-CAG--CTGATTGAGAAAGATCTTCGCC----- 617 Query 268357 AAGACCG--CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGG 268414 |||| || |||||||| || |||||||| |||| || || | || ||| || Sbjct 618 ---ACCGAACGGGTGATTTTGCGTGTCACGAAATTCTCACCGCGCCGCGGTGACTCATGA 674 Query 268415 TTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTC 268474 ||||| | ||||||||||| |||||||| || ||||||||||||||||| || || Sbjct 675 TTGAACAATATGCCGTTGCAGGCGAACATCTTGTACGCCTCACGGTAGTTCACCACAATC 734 Query 268475 CAGTATGCAAACATCTTTGCA 268495 ||| | | ||||||| ||| Sbjct 735 CAGAAACCGTACATCTTCGCA 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921240318393520