Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7146 300 3e-76 >seq7146 Length=6253 Score = 300 bits (332), Expect = 3e-76 Identities = 446/618 (72%), Gaps = 21/618 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||||||||| || ||||| ||||| ||||| |||| | |||| Sbjct 5325 CTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTGGTGGAGCGTTTCAGC 5384 Query 42483 AAAGAGGTGC-AGT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 ||||||||| ||| || ||||||||||||||||||||||||||||| ||||| |||| Sbjct 5385 CAAGAGGTGCAAGTGAC--AGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGA 5442 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAG 42599 | || ||||| ||| ||||| || ||| | |||| |||||| |||||| | || || Sbjct 5443 ATGTCCACTCGGAGATGTACAGCATTCTGATTGACACCTACATCAGGGATCCGCATC-AG 5501 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || || |||||||| || | || || |||| ||||||||||||| |||||| Sbjct 5502 CGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCGGCGGTCAAGAAGAAGGCCGACTGG 5561 Query 42660 GCGCTCAACTGGA-----TCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||| | |||| |||| ||| || | |||| ||||| ||| | | | || | Sbjct 5562 GCGATGGCATGGATCTCCTCGA-AGT--CGGC-CAAC-TTCGGTGAGCGCATCATTGCGT 5616 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | |||||||||||||||| |||||||||||| |||||||| ||||||||||| ||| Sbjct 5617 TCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGGCTGAAGA 5676 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || || || |||||||| ||||||||||| ||||| | ||| | |||||||| Sbjct 5677 AGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGACGAGGGC 5735 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 |||||| | || || |||||||| ||||| | || || ||| ||| Sbjct 5736 CTGCATTGTGATTTCGCCTGCCTGATGTTCCAG---CATCTGGTGCAGCGTCCCAGCCGC 5792 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 || || || | |||||| || || ||| ||||||| ||||||||||||| | Sbjct 5793 GAACGCATCATCGAGATCATCGACGAAGCGGTGAAGATCGAACAGGAGTTCCTCACCGAA 5852 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 ||||||| || || ||||||||||| | | || |||| | |||||||| | | | Sbjct 5853 GCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACTGATGTCCGAGTACATCGAATTC 5912 Query 43014 GTCGCCGACCATCTCCTG 43031 || ||||||| ||| ||| Sbjct 5913 GTGGCCGACCGTCTGCTG 5930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943947700576160