Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq23044 165 3e-36 >seq23044 Length=7840 Score = 165 bits (182), Expect = 3e-36 Identities = 268/383 (70%), Gaps = 2/383 (1%) Strand=Plus/Plus Query 1813 AACGGATGGCGCGGAGATCGACTATCGCGAGATTCTGGAAGAAGCCAAGGAAGCCAACCG 1872 ||| || || || || || || ||||||| ||| | || || ||||| | || ||| Sbjct 2360 AACTGACGGTGCCGAAATTGATTATCGCGTTATTTTAGAGGATGCCAAAGCAGATAACTT 2419 Query 1873 GCGGTGCCCGGTTCAATGCACGCC-GCTCGATCCGCATGGTGCGACGAACCTGTCGCACC 1931 | |||| || |||| | ||| | | || || || || || || ||| | || |||| Sbjct 2420 GAATAACCCGATT-AATGAAAGCCCGATTGACCCTCACGGCGCAACAAACTTATCTCACC 2478 Query 1932 AGCTCGCGGACGAGGGCCTGACGCCGGTCACGATCGTGCAGAACTACACGAACATGTCGG 1991 | || || || ||||| | | || |||| || || || ||||||||||| ||||| | Sbjct 2479 AACTGGCTGATGAGGGATTAAACCCTATCACCATTGTTCAAAACTACACGAATATGTCTG 2538 Query 1992 ACCCGATGAAGGAGCTCGAAGCAGCGATCACGTCACGACGGTTCCATCACGACGGTAATC 2051 |||||||||| ||||| ||||| ||||| | ||| | || || ||||| || || || | Sbjct 2539 ACCCGATGAAAGAGCTTGAAGCGGCGATTGCTTCAGGGCGCTTTCATCATGATGGCAACC 2598 Query 2052 CGATCATGACGTGGTGTATCAGCAACGTGATCGGCAAGAACCTGCCCGGCAACGACGACG 2111 | |||||||| |||||||| | || ||| | || || | | || || ||||| || | Sbjct 2599 CAATCATGACATGGTGTATGGGGAATGTGGTGGGTAAATATTTACCGGGTAACGATGATG 2658 Query 2112 TGGTACGTCCGGTCAAGCAGGGCAACGACAACAAAATCGACGGCGCCGTGGCGCTCATCA 2171 | || | || | || || ||||| || ||||| ||||| || || ||| | || | Sbjct 2659 TCGTTAGGCCTATAAAAGAGCAAAACGAAAATAAAATTGACGGTGCTGTCGCGTTAATTA 2718 Query 2172 TGGCGGTGGGCCGCGCGATGCTG 2194 |||| | || || ||||||||| Sbjct 2719 TGGCTATCGGACGGGCGATGCTG 2741 Score = 131 bits (144), Expect = 5e-26 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1198 AACCATGCTCACGGGGATGGGCGCGCGCCGGCAGCCGTTGATGTTCGTCATCACGACGGC 1257 ||||||| | ||||||||||| || | |||||||||||||||| | || || || || Sbjct 1636 AACCATGTTAACGGGGATGGGGGCAAGACGGCAGCCGTTGATGTGGGCTATTACCACAGC 1695 Query 1258 GGGCGCCAACATTGAAGGGCCGTGCTACGACAAGCGCCGGCAGGTGATCGAAATGCTCGA 1317 || ||||| |||||||| |||||||| ||||| || | ||||| || ||| | | Sbjct 1696 AGGTTATAACATCGAAGGGCCTTGCTACGATAAGCGTCGCGAAGTGATTGAGATGTTGAA 1755 Query 1318 AGGGACGGTGCCCGACGACGAGCTTTTCGGGTGGATCTGGACCATCGACGAAGACGACGA 1377 || ||||| ||| | || || | ||||| |||| ||| | || || | |||||| Sbjct 1756 TGGTACGGTTCCCAATGAGGAATTATTCGGTGTTATCTATACCGTGGATGAGGGCGACGA 1815 Query 1378 TTGGACCGATCCGCGCGTGCTCGCGAAAGCCAACCCGAACATCGGCATCTCGGTCTA 1434 ||||| ||||| | ||| |||||| ||||||||||| || | || ||||| Sbjct 1816 CTGGACAGATCCTAACACGCTGAAGAAAGCTAACCCGAACATGGGGGTTTCAGTCTA 1872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155573903660112