Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5829 104 2e-17 seq5502 89.7 4e-13 >seq5829 Length=1532 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 349 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 290 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 289 ATAACTGATATAATGAGCCTTTTGCGGTTTC 259 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 349 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 290 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 289 ATAACTGATATAATGAGCCTTTTGCGGTTTC 259 >seq5502 Length=7310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 37826 CACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCA 37885 |||| ||||||| ||||||||| || ||| | ||||| ||||||||||| || ||||| Sbjct 5879 CACG-ACGATCT---GTGGAACGCCGCGCAATTGCAGCTGGTGCGCGAGGGCAAAATGCA 5934 Query 37886 TCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC 37945 | |||| ||||| ||| |||||||| | |||||| |||| | || | || Sbjct 5935 CGGCTTCCTGCGTATGTACTGGGCGAAGAAAATACTCGAATGGACTGA-GTCGC-CGGAG 5992 Query 37946 C--GCGCT--CAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATC 38001 | ||||| | | |||||| |||||||| |||| ||| ||||| || || || | Sbjct 5993 CAAGCGCTGGANAATTCGCCATCCTCCTCAATGACAAGTTCAGTTTGGATGGCCGCGACC 6052 Query 38002 CCAACGGTTACGTCGG 38017 ||||||| || || || Sbjct 6053 CCAACGGCTATGTGGG 6068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396901903159132