Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9782 91.5 3e-13 >seq9782 Length=20874 Score = 91.5 bits (100), Expect = 3e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 |||||||| || || ||||| || ||||| || || | || | | ||||||||| Sbjct 11960 GTGAAAATGTAACGAGCACTGGCACTGTCCTTGCCGCCGTTCAGACGAGTACCGAACTGA 12019 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || |||| || | |||||||||| || || ||||| | ||| || | ||||| Sbjct 12020 CCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAGCCCACATAGTTCTGGGCCAAATTCACA 12079 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 |||||| |||||| || | ||||| || || |||||| || || || ||||| Sbjct 12080 ATGGTCATTTGCAGGGACACCTCGCCGTGATGGTAGGCGGACATTTCGGCCACCGAACCG 12139 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCA 297674 ||||| || |||||||| ||| | | ||||||||||| | ||| | |||| Sbjct 12140 GACAACTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCACGTGA--ACATCA 12197 Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 | || ||||| || ||||| || || || Sbjct 12198 CCTTGCGTTGGCCCGGCTTGAAGCCGTCCAC 12228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102411342862100