Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq3187 174 5e-39 >seq3187 Length=10884 Score = 174 bits (192), Expect = 5e-39 Identities = 340/496 (69%), Gaps = 20/496 (4%) Strand=Plus/Minus Query 52160 ATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGT 52219 |||||||| |||| || ||| | ||||| ||| | ||||| || || || || |||||| Sbjct 5817 ATTCCTGAGCTGGAAACCTGGGTGGAAACATGGGCATTCTCTGAAACCATCCACTCACGT 5758 Query 52220 TCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAAATC 52279 || || || || || || |||||||| || | ||||| ||||| ||||| || ||| Sbjct 5757 TCATACACTCATATTATCCGTAATATCGTGAATGACCCGGCGATTATTTTTGACGATATC 5698 Query 52280 GTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACTC 52339 || || ||| | || ||| || | | ||||| |||||||| || ||| Sbjct 5697 GTTGAAAATGAAGAAATTTTAAAACGTGCGAAAGATATCTCTGGTTATTATGATGACCTC 5638 Query 52340 CAGCAACTCACTGC--ATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCATG--- 52394 || | || ||||| || ||||||| ||||| | || || | | Sbjct 5637 ATCGAAATGACCAACTATTATCACA--TGTTCGGTGAAGGCACACACAACTGTAACGGAA 5580 Query 52395 ---AAATTAG----TC--TGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTA 52445 |||| | || |||||| | |||| || | | || | ||| | ||| | Sbjct 5579 AACAAATCACCGTTTCATTGCGTGCGCTGAAAAAACAATTATACCTGTGCTTAATGAGTG 5520 Query 52446 TCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAG 52505 | || ||| |||||||||| || || |||||||||||||| || ||||| || ||||||| Sbjct 5519 TTAACGCACTGGAAGCAATCCGATTTTATGTCAGCTTTGCCTGTTCATTCGCATTCGCAG 5460 Query 52506 AACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCAC 52565 ||||| || |||||||||| ||||| || ||||| | |||||||| |||||||| Sbjct 5459 AACGTGAGCTAATGGAAGGTAATGCTAAAATTATCAAGCTGATTGCACGTGATGAAGCTT 5400 Query 52566 TTCATTTGACAGGAACTCAGCACATGCTGAACCT-TCTTGC-AAGTGGAAAAGATGACCC 52623 | || || ||||| ||||| || ||| ||||||| | || ||| |||||||||| Sbjct 5399 TACACTTAACAGGCACTCAACATATGTTGAACCTGTTACGCTCAGT--CCAAGATGACCC 5342 Query 52624 AGAAATGGGTGAAATT 52639 ||||||| |||||| Sbjct 5341 TGAAATGGCAGAAATT 5326 Score = 131 bits (144), Expect = 6e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 52733 ATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGT 52792 ||||||||| | || || | ||||| ||| |||||| ||||| ||||| || |||||| Sbjct 5169 ATGATTGGCCTGAATAAAGATATTCTGTGCCAATATGTCGAATACATCACCAACATTCGT 5110 Query 52793 ATGCAAGCAGTTGGATTAGATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATT 52852 |||||||| ||||| || | ||||| ||||| ||||||| || || ||||| Sbjct 5109 ATGCAAGCTGTTGGCCTAAAACTGCCATTTGAAGGTCGTTCTAACCCTATCCCATGGATC 5050 Query 52853 AATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCC 52912 |||||||||||| || ||| || || || || ||||| ||| || | ||||| Sbjct 5049 AATGCATGGTTGGTATCAGATAACGTTCAAGTGGCGCCACAAGAAGTTGAAGTCAGTTCT 4990 Query 52913 TACCTGGTCGGGCAAATTGACTCCGAAGTTGATACCAATG 52952 || | ||||| || |||||||| ||||| ||||| ||| Sbjct 4989 TATTTAGTCGGTCAGATTGACTCTGAAGTCAATACCGATG 4950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169331683075404