Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9782 114 2e-20 seq7146 105 8e-18 seq9388 89.7 6e-13 >seq9782 Length=20874 Score = 114 bits (126), Expect = 2e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || ||||| || | ||||| || || || ||||| | ||| || || | ||||| ||| Sbjct 11987 TCCTTGCCGCCGTTCAGACGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 12046 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 172026 || || |||| |||| | |||||| || ||||| || || || ||||| || || || Sbjct 12047 TTCGAGCCCACATAGTTCTGGGCCAAATTCACAATGGTCATTTGC-AGGGACACCTCGCC 12105 Query 172027 GTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATC 172086 |||||||||||| ||| | || || || | | | |||||| |||||||||| ||| Sbjct 12106 GTGATGGTAGGCGGACATTTCGGCCACCGAACCGGACAACTGGGCCACCTTCACCTCGCG 12165 Query 172087 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 |||| ||| | |||||||| |||| ||||| | || ||||||| |||||| Sbjct 12166 CTTGTCGTTGCGCTTGAAGCACGTGAACATCACCTTGCGTTGGCCCGGCTTGAAGCCGTC 12225 >seq7146 Length=6253 Score = 105 bits (116), Expect = 8e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || |||||||| || ||||| | || || |||||| || || |||||||| || Sbjct 5740 TGCAGGCCCTCGTCGCGTGAGATCAACTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 5681 Query 126119 CGCTTCTTCAACCAGAAAATCGCAC--AAAATGAACCCGAGAAGAAGATTCCCTCCACAC 126176 |||||||||| |||||| |||| ||| || ||||||||||| || ||||| || Sbjct 5680 CGCTTCTTCAGCCAGAAGATCGAGGCGAAACTG--CCCGAGAAGAAAATGCCCTCGACGG 5623 Query 126177 ACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCG 126236 |||||||||| || |||||| | ||| | |||||| | | | ||| ||||| Sbjct 5622 CGGCGAACGCAATGATGCGCTCACCGAAGTTGGCCGACTTCGAGGAGATCCATGCCATCG 5563 Query 126237 CCCACTGCGCCTTTTTCTCGA 126257 |||| | ||||| |||| || Sbjct 5562 CCCAGTCGGCCTTCTTCTTGA 5542 >seq9388 Length=2963 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 8673 TTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTG 8732 || || ||| ||| || | ||||| || |||||||| || || || | |||||||| Sbjct 700 TTCGCCTGCAACGGCATATTGTTCAATCATGAGTCACCGCGGCGCGGTGAGAATTTCGTG 641 Query 8733 ACAAAGAAGATCACCGAT--GGTATCAAACAAATCGTCGCGGGTGAGAGGGAGTTCATTG 8790 ||| || |||||| | ||| | || | | || | | || ||||||| | | Sbjct 640 ACACGCAAAATCACCCGTTCGGTGGCGAAGATCTT-TCTCAA-TCAGCTGGAGTTCTTCG 583 Query 8791 AATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCA 8850 ||||||| ||| | | | | | |||||||| || |||| ||||||||| || |||| Sbjct 582 AATTGGGCAACTTGGATTCGAAACGCGACTGGGGCCATGCCATGGACTATGTGGAGGCCA 523 Query 8851 TGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACAC 8910 ||||| | | || || | || | | ||||| || ||| | || ||||| ||||| | Sbjct 522 TGTGGATGATGCTGCAGCGGGACACGCCCGACGATTACGTCATAGCCACGGGCGAGACGC 463 Query 8911 ACTCCGTCAGGGAGTTCGTTGA 8932 || || ||||||||||||| Sbjct 462 ACAGTGTGCGGGAGTTCGTTGA 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597105952131280