Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq30410 152 2e-32 seq28657 125 3e-24 seq12086 104 9e-18 >seq30410 Length=1798 Score = 152 bits (168), Expect = 2e-32 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 15286 GCTAAGCAACAGTGGATTGAGTTTGAGTATCACAACCTCGACAGGTTTGAGGAAATATTC 15345 ||||| ||||| |||||||||||||||||||||||||| ||| | ||| || || | Sbjct 1531 GCTAAACAACAATGGATTGAGTTTGAGTATCACAACCTAGACCGTTTTACCGAGATTTGG 1590 Query 15346 ATCTCGATGGACGTTGATGATGTTGGTCGTGAAGCCGCAAGGGAAATCGTAAGCCGACTC 15405 | || |||| | ||| || || || || || || |||| || || | | ||||| Sbjct 1591 CTGTCACTGGATGCTGACGAAGTAGGGCGAGAGGCAGCAAAAGAGATTGCTAATCGACTT 1650 Query 15406 GGTGAACATCGTTGCCGTCTTGTTACTCTGCCGTACAAAGACATCAACGAATGCCTGATG 15465 |||||| ||||||| || |||||| | |||||| | ||||| |||||||||||||| | Sbjct 1651 GGTGAATATCGTTGTCGCCTTGTTTCACTGCCGAAAAAAGATATCAACGAATGCCTACAG 1710 Query 15466 AACGGTGTTACCGAGGATGAAATCTGGCAGTACATCGGCACGGCATCCTATTTCGATCCT 15525 || ||||| | || |||||| ||||| | | || ||| |||| || || ||| Sbjct 1711 GCTGGAATTACCCAAGAAGAAATCATTAAGTACCTTGAAACCGCAACCTACTTTGACCCT 1770 Query 15526 GAAGAACTCTACAGTGCGCGAGAGTTT 15552 || || | | |||||| || |||||| Sbjct 1771 GATGAGTTATGCAGTGCCCGCGAGTTT 1797 >seq28657 Length=2955 Score = 125 bits (138), Expect = 3e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 11301 TTTCTAATAGTGTAATATTTTCTTACATCACTGCTTGAAAATGCTTCTTGAATAACAGCT 11360 ||||| || |||||||||||| | || ||||| || ||||| || ||||| ||||| ||| Sbjct 172 TTTCTTATTGTGTAATATTTTTTAACTTCACTACTAGAAAAAGCCTCTTGTATAACCGCT 113 Query 11361 TCTATATAAAGGCGGTCAATGCTAAGATTATCAGAGTTTGATTCAGTAACGCGTATGGCA 11420 |||||||| | || || ||||| | || | |||||| | ||||| || ||||| | | Sbjct 112 TCTATATACAATCGATCTATGCTCATGTTTTGAGAGTTAGCCTCAGTGACTCGTATAGAA 53 Query 11421 GCTAATTCAACATTATATAAATTAAGAATGTCGAGGATGTTATTTCTCACAT 11472 || | ||||||||||| ||||| | || || | || |||||||| |||| Sbjct 52 GCCACATCAACATTATAAAAATTTAATATATCCAATATATTATTTCTTACAT 1 Score = 111 bits (122), Expect = 6e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 10696 CCAAAGTCAGATAGCATGGCCTCATTTCTGTTTGATATCATAATGTTATTAGGTTTTATA 10755 ||||| |||| ||||| || ||||| | || || | ||| || || || || |||||| Sbjct 838 CCAAAATCAGCAAGCATTGCTTCATTGCGATTAGAAAGCATTATATTGTTTGGCTTTATA 779 Query 10756 TCAAAATGCATAAGACCTTTTGAGTGTATATGATAAAGTCCACTTAAAAATTGAATGGAA 10815 |||||||| ||||| |||| |||||||||| ||| || | || |||||| || | Sbjct 778 TCAAAATGAATAAGCTTATTTGTATGTATATGATTAAGACCGCCTAGAAATTGTATTGCG 719 Query 10816 TACCGTATTATCTCCCTGCTTGTAAGATTAttttttttCATTAATTGGTTTAGCGAACCA 10875 || || || || |||| || || || | | | ||||| ||| |||| || || Sbjct 718 TAACGAATAATTTCCCGTGGAGTTAGGTTCTCTATACTCATTTTTTGATTTAAAGACCCG 659 Query 10876 TTATGATAAAATGGCATGGCTATATA 10901 || | |||||||||||| |||||||| Sbjct 658 TTTTTATAAAATGGCATTGCTATATA 633 >seq12086 Length=38917 Score = 104 bits (114), Expect = 9e-18 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 20627 TATATATTCGAAGGCGAACAAGGTGAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCG 20686 ||| |||| ||| ||| ||||| |||| |||||||||||||| || ||||| || ||| Sbjct 1697 TATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCG 1638 Query 20687 CCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 20731 || ||||| || ||||| || |||||||||||| |||||||||| Sbjct 1637 CCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202657250661256