Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8405 95.1 1e-14 seq3053 93.3 5e-14 seq8890 89.7 6e-13 seq25582 87.8 2e-12 seq29710 82.4 8e-11 >seq8405 Length=2727 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| ||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 2244 AAAAATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2185 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 2184 TGACCACTATACTATCGAGGAT 2163 >seq3053 Length=25279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| ||||| |||||||||||| || ||||| | || || || | || ||| Sbjct 10171 ACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATCTTCT 10112 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| ||||| || || || || || || || | || | | ||| |||||| || Sbjct 10111 AATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCC-TG 10053 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | ||| | || | | ||||| | ||| || || | |||||||| || Sbjct 10052 AATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGGTCTT 9993 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || || ||||||||||| |||||||| Sbjct 9992 CCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 >seq8890 Length=5443 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 56998 AAAAATTT-TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| |||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 2068 AAATATTTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 2009 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || |||||||||||| |||||||| Sbjct 2008 CTGACCACTATACTATCGAGGATT 1985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 56998 AAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| | |||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 961 AAAAATTGGATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 902 Query 57055 TACTCACCACTATACTACCGAGGATTG 57081 |||| |||||||||||| ||||||||| Sbjct 901 TACTGACCACTATACTATCGAGGATTG 875 >seq25582 Length=1440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 269 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 210 Query 57066 ATACTACCGAGGATTG 57081 |||||| ||||||||| Sbjct 209 ATACTATCGAGGATTG 194 >seq29710 Length=1637 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 262 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 203 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 202 TACTATCGAGGAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542987597553440