Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq15048 269 3e-67 seq3053 100 3e-16 seq31959 96.9 3e-15 >seq15048 Length=4365 Score = 269 bits (298), Expect = 3e-67 Identities = 1126/1772 (64%), Gaps = 26/1772 (1%) Strand=Plus/Plus Query 153671 TTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCC 153730 |||||| || || ||| || |||| ||| || |||||||||| | |||||||| || Sbjct 1282 TTTGTCAACCGTGAATTGAATGGCATTCGCTGCTGGTTTAGTTCTAAGGTAATACATTCC 1341 Query 153731 GGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCA-CGCTAGTTAATAACGCGAAACTGG 153789 ||||| | |||| |||||| | | || | || | ||||| | | || | | Sbjct 1342 AGTTTTTAGACCAGCTTTCCACGCAAAGAAATGAATCGAT-GTTAACTTCCCATAATTTG 1400 Query 153790 GCTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCG 153849 ||| | | | | ||||| |||||||| |||||||| || || || | ||| || | Sbjct 1401 GCTCTCCAACATGAATATTAAATGACTGGCTTTGATCGATAAATGCTCCTCTATCAGCAG 1460 Query 153850 CCATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATG 153908 |||| ||| | ||| |||| | |||||||| ||||||||||| | | ||| Sbjct 1461 CCATTAAAATTGTTGATTTAACTGAT-ATTTCCCAAACAGTTTTGTAAAGATCCCGTATG 1519 Query 153909 TCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGC 153968 | | ||||| | || || || || | || | | | ||| || || | Sbjct 1520 TTTTGTGGTATACTTTCGATATTTTGAATGGAACCACGGCTAGATATTATTTCGTTTTTC 1579 Query 153969 ATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACT 154028 || || || || |||||| |||| || |||| | ||||| ||||||| ||| Sbjct 1580 ATTTGTTCATCCCACAAATCTAGTTCGGTTAGATCTCTTAGTAAGTGATGGTTAACCACT 1639 Query 154029 TGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGAT 154088 ||||| ||||| | |||||| || ||| || | ||| || |||| || || ||| Sbjct 1640 TGAAATTCGCCCGACAATACTCGCCGCGTGTAAATATTTGACGTATACGGTTCAAAAGAT 1699 Query 154089 TCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAG 154148 ||||| || || || || || || || | |||||| ||||| ||||| | | |||| Sbjct 1700 TCGTTATTTCCCAAAATCTGCGCGGTGGATGCTGTTGGCATTGGTGCCACAAGTAGAGAG 1759 Query 154149 TTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || | | ||| | ||| || ||||||||| ||||| |||||| || ||| Sbjct 1760 TTCCTTATACCATATTTCTTTATTTTATTTTTTAAATCAATCCAATCCCACAAATTTGTA 1819 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAA 154268 || || |||||| || || |||| | ||| || | ||||| | ||| Sbjct 1820 GGAGTTACTCCCCACATATCATACTGCAGTATTCCCTTGCTGACGGGACTTCCGTCATAT 1879 Query 154269 CTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328 | || || || || ||||| || ||||| || || || || || | || Sbjct 1880 GTTTCATATGGTCCAAATTTTTCTGCCAGCTCACAACTTGCCTCCAATGCGCCAAAATAA 1939 Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388 | ||||| ||||| || || || | || || |||||||| || || ||| | Sbjct 1940 ATTGTTTCAAAGATTTGCTTATTCAAAAGAAACGCGTTCTCACTTTCATAAGGGTATCTC 1999 Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448 | || | |||||| ||||| |||||||||| || | |||| ||||| ||| ||| Sbjct 2000 ATTAAAATAAAAGCGTCGGCCAGCCCTTGAACACCAATACCAATAGGTCTATGTCGCAAA 2059 Query 154449 TTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANNNNN 154508 ||||||| ||| || | | ||||||||||| | ||| || |||||||||| Sbjct 2060 TTCGATTTTTTTGCTTCGGGTAATGGATAATAATTTACATCAATTATTTTATTTAAATTC 2119 Query 154509 NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACACT----CCGCTTTT 154564 || ||| ||||| ||| ||||| | Sbjct 2120 TTGGTGACTATTTTTGTGACCTCTTTTAATTTTTTAAAGTCAAAGACTTTATCCGCTGTC 2179 Query 154565 AATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACT 154624 | || | ||||| | | || || | |||||||||||| || || || | | | Sbjct 2180 ACAAACAT-ATTTAAAGCAATCGAAGCGAGGTTGCAAACGGCTATCTCATCTGG--TGCC 2236 Query 154625 G--TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGA 154682 | |||| |||||||| | || | |||||||||| || || || ||||||| || Sbjct 2237 GAATATTCAACAATTTCAGTACATAGATTACTGCATTTTATAGTACCGAGGTTTTGTTGG 2296 Query 154683 TTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGG 154742 || ||| | ||||||| |||||||| | || || ||||| || ||||||||||| Sbjct 2297 TTGCTTTTTCTATTGCATGAATCTTTGTATAGCATATATGGGGTACCTGTTTCCACTTGT 2356 Query 154743 GTTTCAATAATTGTG--CGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTT 154800 | || ||||| | | ||| |||| | || | |||| | | | || | Sbjct 2357 GCCTCTATAATCGCAAACCAAAGGGACT--GGGCTTTTACTTTTCTATTCGCGCGTCCCT 2414 Query 154801 CGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGG 154860 | ||||||||| ||| |||| | ||||| || ||| | || || ||| || | Sbjct 2415 CTTTCTCATATTTTTCATACAAGGTCTCAAATTCCGAACCCCAAACTTCATGCAAGCCAG 2474 Query 154861 GACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACA 154920 |||| || || ||||| | ||||| |||||| || || ||||||||||||| Sbjct 2475 GACACTTGTGAGGGCACATAAGGGACCAATCTTCGTTAGCTTCAACTCGTTTCATAAACA 2534 Query 154921 AATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGT 154980 |||| || | ||||||||| || || |||||||| || | | ||||| |||| ||| Sbjct 2535 AATCGGGAATCCACAAAGCATAAAATAAATCACGAGCTCTATGTTCTTCCTTGCCCGTGT 2594 Query 154981 TTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCA 155040 || |||||||| |||||| ||| | || || | |||||| |||||||| || | || | Sbjct 2595 TTTTCTTTAAATCCAAAAACTCAAAAATATCAGAGTGCCAAGGCTCTAAGTAGATTGCAA 2654 Query 155041 TCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGC 155097 || || | |||| |||||||| || |||| || | ||| ||| | || | Sbjct 2655 AAGCTCCAGGCCTTTTTCCGCCTCCTTGGTCAACGTAGCGGGCCACATTGTTGAAAACTC 2714 Query 155098 GCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAG 155157 | || ||| ||| |||| | | || || || || || ||| | |||| || Sbjct 2715 TTAGCATTGGCACCAGGCCGTTAGAAGTTCCATTAGTTCCTGATATAGATGTGCCTTTAG 2774 Query 155158 CACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATAT--TTGCGCACA 155215 | || ||||||||| | || | |||||| | |||||||||| | ||||| Sbjct 2775 CTCGTATGCAATGAACATTTATTCCAATACCTCCAGCTGATTTAGATATCATAGCGCATT 2834 Query 155216 GTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACA 155275 || | | | || | || |||| || ||| | || || | | ||| || Sbjct 2835 GT--TCAACTGATTTAAAAATACCTTCAATTGAATCTGCAACCATTGTAAGTAGGAAGCA 2892 Query 155276 CGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGT-AA 155334 || || | ||| ||| || | || ||||| | ||| || || || || || Sbjct 2893 AGATGAAAGTTGCGGTCGAATTGTTGCAGCAGCAAAAAGTGTCGGTGATGCATGCGTAAA 2952 Query 155335 ACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTA 155394 | || || | | | | ||||||| ||||| || |||| || || ||| ||| || | Sbjct 2953 AAATCTTTCCGACAGAT-AGTTGTAGGTTTCAATTGCGGAATCTATATCATCACCATGAA 3011 Query 155395 TACCGATCGCCACGCGCATCAGCATGTGTTGA 155426 |||| || | ||| | ||||| |||||| ||| Sbjct 3012 TACCTATAGACACCCTCATCAACATGTGCTGA 3043 >seq3053 Length=25279 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || ||||||||||| ||||| | | || || | || Sbjct 10175 AAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGACAATGTACGTCCATC 10116 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || ||| |||| || || || || || ||||||||||| ||||| || Sbjct 10115 TTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGAATTCCCTCTTTGTC 10056 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| ||| | ||| || | || || |||| || | || Sbjct 10055 CTG-AATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGACCTCTAAGGTGATGG 9997 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || || | |||||||| || || |||||||| Sbjct 9996 TCTTCCCCGTGAGGGTTTTTACAAAGATCTGCATTTT 9960 >seq31959 Length=2257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 || |||||||| || ||||| ||||| |||||||||| | ||||||||||| |||||| Sbjct 931 GGGCTGCACGGCTTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATCTCCGCC 872 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 ||| || ||||||||| | | | || |||||||| || | || | ||||| Sbjct 871 GGCCCCCACTTCAACCCGCTGGGCAAGGAGCACGGCGCCCCCACCGACGAGGAGCGCCAT 812 Query 115481 GTCGGTGATCTGGGCAACGTCGA 115503 |||| || ||||||||| |||| Sbjct 811 CTCGGCGACCTGGGCAACATCGA 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499437659757040