Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq6497 82.4 2e-11 >seq6497 Length=13545 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 27183 CCTTCCCGTAGCTTTGCTGATGCTGTTCTGCATAACTGGCTTATTACCGCTGGC--AATC 27240 || || || || ||||||||||| || |||| | ||| | |||||||| || || | Sbjct 11821 CCATCACGGAGTTTTGCTGATGCCGTATTGCACACATGGTTAATTACCGCAGGTGAAAGC 11762 Query 27241 CAGAA-AATACGATCGACATCGTGAAGCTGTATGAAATTGCTGACAGTCTGCCTGATGAG 27299 |||| |||| ||||||||| ||| ||| |||| || || ||||||||||| Sbjct 11761 GAGAAGAATA---TCGACATCGACGGGCTATATCGAATTTACGATAGCTTGCCTGATGAG 11705 Query 27300 CGCCTTGGGTGGTTCGACTATACATTCGATGATGAAGATA 27339 || || || | ||||| || |||||||| ||||| |||| Sbjct 11704 CGACTAGGTTACTTCGATTACACATTCGACGATGAGGATA 11665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143984869755996