Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011142.1 Length=47453 Score E Sequences producing significant alignments: (Bits) Value seq6146 87.8 5e-13 >seq6146 Length=11763 Score = 87.8 bits (96), Expect = 5e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 42828 TGGCGTCTACCTTCTTTGGTAGCTCTTTCATATCCGCCACCAGCTCTTTTCCCAGGCCAT 42887 ||||||| | |||||||| ||||| | || || |||| ||||| || || |||| Sbjct 2327 TGGCGTCGATTAGCTTTGGTATTTCTTTTAACTCTGCTACCAAGTCTTTACCGAGCCCAT 2268 Query 42888 CAAGGTAAGTTTTTGACTGAGCCACGCGGTAGGCAACAGAGGCAATTTCTTTTCGGCCCT 42947 |||||||||||||||| ||||| || |||||| | || |||||||| || || || | Sbjct 2267 CAAGGTAAGTTTTTGATTGAGCGACTTTGTAGGCCAATGAAGCAATTTCCTTGCGACCTT 2208 Query 42948 TGGCGGTATTTACATCAG 42965 | | || | ||||||| Sbjct 2207 TAACAGTGGTGACATCAG 2190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151668242496180