Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq11591 98.7 8e-16 seq31650 93.3 3e-14 seq24716 93.3 3e-14 seq3600 84.2 2e-11 >seq11591 Length=1675 Score = 98.7 bits (108), Expect = 8e-16 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 108449 AGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGA 108508 |||||||||| | ||||||| ||| || | || |||||||||||||| || || Sbjct 414 AGAACACCATGTACGACTGGGTGCGCGACCATCGCGTCCACCACAAGTACTCGGAGACCG 355 Query 108509 CGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGA 108568 || ||||| ||||| |||||| |||| |||| ||| | || || || ||||| |||| Sbjct 354 ATGCGGACCCCCACAATGCCAACCGGGGCTTCTTCTTCGCCCATGTCGGCTGGCTGATGA 295 Query 108569 TGACCAAGGACCCCGACGTGATCTCGGCC--GGTCGAAAAATGGACATGA 108616 || |||| |||| || ||| || ||| || || ||||| ||||||| Sbjct 294 TGCTCAAGCACCCGGAGGTG--CTGCGCCAGGGCCGCAAAATCGACATGA 247 >seq31650 Length=1421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 108864 CAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCC 108923 |||||| ||| || | | || |||||||||||||||||||||| |||||||| ||||| Sbjct 210 CAAATTTGTGTCGACCGTTGCGTTCGGCGAGGGATGGCACAACTATCACCACGTCTTCCC 269 Query 108924 CTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 || |||||||| || || |||||||| ||| || Sbjct 270 CTGGGACTACAAAGCAGCTGAGTTGGGCAACTAC 303 >seq24716 Length=1597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 108864 CAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCC 108923 |||||| ||| || | | || |||||||||||||||||||||| |||||||| ||||| Sbjct 1134 CAAATTTGTGTCGACCGTTGCGTTCGGCGAGGGATGGCACAACTATCACCACGTCTTCCC 1193 Query 108924 CTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 || |||||||| || || |||||||| ||| || Sbjct 1194 CTGGGACTACAAAGCAGCTGAGTTGGGCAACTAC 1227 >seq3600 Length=1531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| || |||||||| ||||||||||| |||||||||||||| | ||||||||| ||| Sbjct 113 TGGCGCTGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCGTGGGACTACAAGACCG 172 Query 108941 CCGAGTT-GGGGA--ACGACTTTAATTTCACC 108969 |||||| || || || | || ||| ||||| Sbjct 173 GCGAGTTCGGCGACTACAAATTGAATGTCACC 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381618483377904