Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7146 129 6e-25 seq31959 114 1e-20 seq3053 98.7 1e-15 >seq7146 Length=6253 Score = 129 bits (142), Expect = 6e-25 Identities = 413/624 (66%), Gaps = 15/624 (2%) Strand=Plus/Plus Query 52112 GCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATTAACCTCATCGAGTA 52171 ||||||| |||| |||||||||||| ||||| |||| || ||| || || | ||| Sbjct 5318 GCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATTGTCAACGAGAATCTGGTGGAGCG 5377 Query 52172 CATGCAGCGGA-ACGTTCCGGAACTCGAGGCGCAATACTTTTATAATTTGCAAGTGCTCA 52230 | |||| | | || | | ||||||| | ||| || || || | || Sbjct 5378 TTT-CAGCCAAGAGGTGCAAGTGACAGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCA 5436 Query 52231 TCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTG-ATAAAAGATGAG 52289 | ||| || ||| |||||||||||| | || ||||| || || || | ||| | Sbjct 5437 TGGAGAATGTCCACTCGGAGATGTACAGCATTCTGATTGA-CACCTACATCAGGGATCCG 5495 Query 52290 CACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAA-AAGGC 52348 || |||| ||| ||| | |||||| |||| ||||| ||| || || ||||| Sbjct 5496 CATCAGCGGGACTTCCTGTTCAATGCGGTCGAAACATTGCCG-GCGGTCAAGAAGAAGGC 5554 Query 52349 TCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGC 52408 | ||||| ||| |||||| | | |||| | | |||||||| | || Sbjct 5555 CGACTGGGCGATGGCATGGATCTCCTCGAAGTCGGCCAACTTCGGTGAGCGCATCATTGC 5614 Query 52409 CTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAA 52468 |||||| ||||||||| | || || || ||||| || ||| | ||||| | | || Sbjct 5615 GTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGGCTGAA 5674 Query 52469 AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGG 52528 | | ||| | ||||||||||| || ||| |||||||||||| || |||||||| || Sbjct 5675 GAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGACGAGGG 5734 Query 52529 ACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG-ACCGAAAAATTGGATT 52587 ||||| || || || ||||| | | || | ||| | || | | Sbjct 5735 CCTGCATTGTGATTTCGCCTGCCTGATGTTCCAGCATCTGGTGCAGCGTCCCA---GCCG 5791 Query 52588 CGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACG 52646 || || | ||| | ||| || || | || |||||| |||||| ||||||| | || Sbjct 5792 CGAACGC-ATCATCGAG-ATCATCGACGAAGCGGTGAAGATCGAACAGGAGTTCCTCACC 5849 Query 52647 GCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTGCGAGTACATCGA 52705 | |||||||||||| | || | ||||||||| || | | |||| |||||||||||| Sbjct 5850 GAAGCGCTGCCGGTCAATTTGATCGGCATGAACTGCAAACT-GATGTCCGAGTACATCGA 5908 Query 52706 GTTTGTGGCGGATCGTCTGTTGGT 52729 || ||||| || |||||| |||| Sbjct 5909 ATTCGTGGCCGACCGTCTGCTGGT 5932 >seq31959 Length=2257 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 57299 TGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTT 57358 ||||||||| |||||||| |||||||| || ||| | | || |||| |||||||| | Sbjct 784 TGGCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCT 843 Query 57359 CGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 57418 | |||| ||||| ||||| ||| || || ||||||||||| || ||||||||| Sbjct 844 CCTTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGA 903 Query 57419 ACTCGTGAACGTGAAATCCGTGCAGGCC 57446 ||||||| || || || |||||||| || Sbjct 904 ACTCGTGCACATGGAAGCCGTGCAGCCC 931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 57112 ATGCCGATGATGCCGCAGCCGAGACGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAGCGGA 57171 |||||||| | |||||||||| ||| | || | ||||||||||||||||||||| Sbjct 509 ATGCCGATCACACCGCAGCCGACGCGGGCCCCAGCATTGCCGGTGGTCTTGCTCAGCTCG 568 Query 57172 TGTTCGGTGAGGCCGAGATCGTCGCGCTTCGCGTGAACCACCAGACTGCGGCCGACGACG 57231 || || ||| || |||||| | | ||||| || |||| |||| |||| || | Sbjct 569 TGGCCGCCCTTGCCCAGGTCGTCGGGATCGGCGTGCACGACCATGGTGCGCCCGATGATG 628 Query 57232 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCG 57264 || || | ||||| |||| ||| ||||||| Sbjct 629 CTGTTGGCCCCGAACAGCGAGATCTTGTTGTCG 661 >seq3053 Length=25279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||||| ||||||||||||||||||| || ||| | Sbjct 10189 CCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCGGAC 10130 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | |||||||| ||||| || ||||| Sbjct 10129 AATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGAGGA 10070 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | ||| | | || | ||||| | | || || Sbjct 10069 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTCGAC 10011 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || ||||||||||| |||||||| Sbjct 10010 CTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056662015520