Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq6146 132 2e-26 seq12086 109 2e-19 >seq6146 Length=11763 Score = 132 bits (146), Expect = 2e-26 Identities = 458/701 (65%), Gaps = 20/701 (3%) Strand=Plus/Minus Query 1382 CAACTAAGATCAGCAATTAGTTGGTGCATGCGGCGTCAGTTGATAGATAGTTGCGCAATT 1441 ||| | | |||||| |||| ||||| || |||||||||| || ||| |||| |||| Sbjct 10081 CAATTGAAATCAGCCATTAACTGGTGTATTAGGCGTCAGTTTATTGATGATTGC--AATT 10024 Query 1442 --ATGAGCATCCAACCAAGGGACTTCGGCTCCCGCGCT-GAGGTAGGGGATC--GGGTAC 1496 |||| || || || || | || ||| ||| | ||||| |||||| Sbjct 10023 TAATGAAGATAAGCCCTAGAGATGTTGGGGAAAAGGCTAGAGTT---GGATCAAGGGTAC 9967 Query 1497 TGTCGTATCACGAACTGGCTAAGATCTGGCTTGCTATTGAAAGAAGCCGTGCGTCTACGT 1556 || | ||| ||||| ||| || ||| || || |||||||| | || | || | Sbjct 9966 TGACATATACAGAACTAGCTGCAATTTGGAAGGCAATAGAAAGAAGTAGGGCTGCAACAT 9907 Query 1557 CAAATAAGCTCCTTCATCAGATGCTTATGCTGTGGGGGGCGAGGCTCTCAGAGCTTAGGC 1616 ||||||| || | ||||| ||| | ||||| ||||| || | |||||| | |||| Sbjct 9906 CAAATAAACTATTACATCAAATGATAATGCTTTGGGGTTGCAGAATATCAGAGTTAAGGC 9847 Query 1617 TGGCAACAAAGACAGAATTTGACCTGCTGGACAACGTATGGACCGTACCGAAAGAGCATA 1676 | | || | |||| || || || || || |||||| | || || || |||| | Sbjct 9846 TATCCACTACTTCAGAGTTCGATCTAAATGAAAAAGTATGGTCTGTCCCAGAACAGCACA 9787 Query 1677 GCAAGATGGGTAATGTTATCCGCCGTCCAATCTTCG-ATCAAATTAAGCCTTTTCTCGAA 1735 |||| | || || || || | || || || ||| ||| | | || | || | | || Sbjct 9786 GCAAAACAGGAAAGGTGATTAGGCGACCTATATTCCCATCTATTGAACCATTAT-TAGAT 9728 Query 1736 AAGGCCATGACAACGTACAATGATGTTCTTTTCCCTGGAGAAGACATAAACAAACCGATC 1795 || || ||| || || ||| | | ||||| ||| | |||| || ||||| || Sbjct 9727 AAAGCACTGATTACATATGGTGAAATATTATTCCCCGGACAGAACATTAATAAACCCATG 9668 Query 1796 AGCATCGCTGCAGCTAACCGATTCGTAAATAGAATAAGGGGAGGGATGGATCTAGGTTAC 1855 | || ||||| || || ||| |||||| || ||| | ||| | | | | Sbjct 9667 ACTATAGCTGCTGCCAATAGATACGTAAAAAGGCTAAATGATTCAATGAGGGTTGATGAT 9608 Query 1856 TGGCGAACACATGATTTCAGAAGAACGCTTGTTACACGTCTGTCCGA-GATGAATGTCGA 1914 ||||| | || || || |||||||| | | ||| || | || || || | || | Sbjct 9607 TGGCGCGCGCACGACTTTAGAAGAACAATCGCTACGCGCTTATCTGAAGAAGGG-GTAGC 9549 Query 1915 GCCTCATGTTACTGAGCGAATGCTCGGTCATGAACTTGGCGGGATAATGTCCGTATACAA 1974 || ||||| | |||| |||||| || |||||| | | || || ||| | || || || Sbjct 9548 CCCGCATGTAATTGAGAAAATGCTAGGGCATGAAATGGCTGGAATCATGGCTGTGTATAA 9489 Query 1975 TAAACACGACTGGATAGAGGCTCAGCGCAAA---GCGTATGAGCTTCACGCTGATAAATT 2031 ||||||||||||||| || | | | ||| ||||| || | || || |||||||| Sbjct 9488 TAAACACGACTGGAT-TAG--TGAACAAAAAGATGCGTACGAAATACATGCAGATAAATT 9432 Query 2032 GTTCTGGCACATCAGGAGCATTTCTGATTAACGCCACCGTT 2072 ||||||||||| | || | | |||| || | ||||| || Sbjct 9431 ATTCTGGCACATTAAGAACTCTGCTGACTAGCACCACCATT 9391 Score = 100 bits (110), Expect = 1e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 400 GTAGCCCAGAATACAGGTCTTCGGTACGGTAAAAAGCGAGTGAATACGGGCGGCAAATGC 459 |||||||| |||||| || || || || |||| ||| || || | ||| | Sbjct 11055 GTAGCCCATAATACACGTATTGGGCACACTAAACGCTTGGTGGATGCGTTTAGTAAACTC 10996 Query 460 GGCTTCGTTTTCTCCTTTCGCCCGAGCTTCCTGCGGGGTAATACCGGTAATTAATACTGC 519 |||||| || | |||| || || |||||||| || || || || | || || Sbjct 10995 GGCTTCATTAACGCCTTGTGCTAAGGCAATTTGCGGGGTGATCCCAGTGATCATGACGGC 10936 Query 520 TCCAGGCTGGGGTAAATAGTCATCCGCGGGCTTGCAGTAAAAGACTTCGGGTTCGCCGAT 579 | ||||||| || | ||| ||||| || || |||||||| ||||| || || | || Sbjct 10935 TTCAGGCTGTGGCAGATAATCATCAGCAGGTGCACAGTAAAAAACTTCAGGCTCTTCAAT 10876 Query 580 GACATTGAATTCGTCATCGGTGCGAATGGCTGCGAACTGTGCAGGGCGATCTAACGCGGG 639 || || || || ||| ||||| | | || || || ||||| | ||| | || || Sbjct 10875 GATGTTAAAGTCTAAATCAGTGCGTACACCGGCAAATTGAGCAGGCCTATCAAGTGCAGG 10816 Query 640 GTGCGTGCCAAAGGTTTCGTAATCGTGAAAGAGGAAGGTAGGTTG 684 | || ||||||| |||||||||||||||| | ||| | ||||| Sbjct 10815 GCGCTTGCCAAAAGTTTCGTAATCGTGAATAAAGAATGAGGGTTG 10771 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 191 GCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCATCATTTTCAGGCCAGTTT 250 ||||| ||||| ||||| | || | || || | |||||| |||||||||||||| | Sbjct 11314 GCTTTTGTTAAGTGCTCTAAACGCATACTTGGCAAACCGTCTTCATTTTCAGGCCATTCA 11255 Query 251 ATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCCAGCGCGAG 310 || ||||| ||||| || ||| | |||||||||| || ||||||||||| || || Sbjct 11254 ATGCCTTCAGGGCGTAGCGCAAAACAGGCACGCAGTGGGTCGAGTAAATCCCAACGTGAA 11195 Query 311 TT 312 || Sbjct 11194 TT 11193 >seq12086 Length=38917 Score = 109 bits (120), Expect = 2e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 21781 TATATATTCGAAGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCTCAGTTGTCG 21840 ||| |||| ||| ||| |||||||||| |||||||||||||| || ||||| || ||| Sbjct 1697 TATTTATTTTCAGGTGAAGAAGGTAAGCGCGACAGCATTATTGTAGTTGCTCAATTATCG 1638 Query 21841 CCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 21885 || ||||| || ||||| || |||||||||||| |||||||||| Sbjct 1637 CCTGAATTTACAGCTCGACTAGTTGACCGCTGGAAAGAACTCGAA 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198670523530428