Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq26497 145 2e-30 seq13007 114 3e-21 seq12086 105 2e-18 seq28844 95.1 3e-15 seq22958 87.8 5e-13 seq6436 82.4 2e-11 >seq26497 Length=2520 Score = 145 bits (160), Expect = 2e-30 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 28426 GTAAATACGCTGGCATGGGTATTTTTGAGTGCCGCTATCCGTGCTTTAGAGTTTCCAATG 28485 |||||||| ||||||| ||||||||||| ||||| || || |||| | | | ||||| Sbjct 1802 GTAAATACACTGGCATTGGTATTTTTGATAGCCGCCATACGCTCTTTGGCGGTACCAATA 1743 Query 28486 ATGGGTTGTACTTCAATATTACGCAGGTGGCTCCATTTAAGCGCTTCATCTGGCCAGGTG 28545 || ||||| || || |||||||| | ||| ||||||||| |||||| |||||||| || Sbjct 1742 ATCGGTTGAACATCGATATTACGTAAGTGATTCCATTTAATCGCTTCGTCTGGCCATGTT 1683 Query 28546 GATTGCGCTACCCGTAACGGGGCTAACACTAATGTCGGTTTGGTTTCACTGCC 28598 || ||||||||||| ||||||| ||||| | ||||| |||||||| || Sbjct 1682 GAACTAGCTACCCGTAATGGGGCTAGAACTAAAGCCGGTTGCGTTTCACTACC 1630 Score = 131 bits (144), Expect = 4e-26 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 27687 TTTTCCTTTTGGAAAGGCTTTTAATAAACGCTCCAGGTCATGTTTCCAGTGGTAAGCGAC 27746 ||| ||||| ||||||| |||||||| || || | ||| || |||||||||||||| || Sbjct 2479 TTTACCTTTAGGAAAGGATTTTAATAGGCGTTCTAAGTCGTGCTTCCAGTGGTAAGCAAC 2420 Query 27747 CAGTACTGGCGTCCCTCCTGATTCATTAACAATACTCTCTAGCGCCTGAATTTTGGCATC 27806 |||| |||| | || ||||||||| ||| ||||| || | |||||||||||| ||||| Sbjct 2419 AAGTATTGGCATACCACCTGATTCACTAATGATACTTTCCAACGCCTGAATTTTTGCATC 2360 Query 27807 GTGTATCGCTGTCCAGTTGTGATTGTCATCGCTATAAATAGCGCCNNNNGCAATTTGTAA 27866 ||| | | ||| || | | |||||||| | || ||||| || || ||||| || Sbjct 2359 GTGCAGTTCGACCCAATTTTTACTGTCATCGGTGTAGATAGCACCACTGGCGATTTGCAA 2300 Score = 111 bits (122), Expect = 4e-20 Identities = 221/326 (68%), Gaps = 1/326 (0%) Strand=Plus/Minus Query 31894 TAGATCCTGACTGTCCAGTACGATAACCTGATGGCCCAGGGCAAAAAGCCGTGCGTGTTC 31953 || ||||| || |||| | || ||| ||| || | |||||||||| || ||||| Sbjct 1067 TAAATCCTTGCTATCCAAAATGACAACGTGAAACCCTAATGCAAAAAGCCTAGCATGTTC 1008 Query 31954 GCGTAATTGGTAAGGGGTAGGTTTTTCGCCCGGTGCTTTACACTCCACAAAAATAATCTT 32013 |||| ||| | ||| || ||||| || || ||||||||||| ||||||||||| || Sbjct 1007 CCGTAGTTGATCGGGGCGGGGCTTTTCTCCGGGGGCTTTACACTCAACAAAAATAATTTT 948 Query 32014 GCCATTGGGCAGGGCAACTAATCGGTCAGGCACGCCTCGTCGTCCGGGTGAAACGAATTT 32073 || ||| |||| || | | || ||||| ||||| || || |||||| || || Sbjct 947 GCTATTAGGCAAAAGTACGATCCTATCTGGCACACCTCGACGACCCGGTGAAGTAAACTT 888 Query 32074 ATAGGCAATACCGCCGATTTTTTGCACTTCACGCACCAGGTGTTTTTCAATGCTGTCTTC 32133 ||| | ||||| || ||||| ||||||| |||| ||| |||| || ||||| Sbjct 887 ATAAGTGATACCACCTGCTTTTTTCACTTCATTGACCAAGTGCCTTTCGATTACATCTTC 828 Query 32134 CCTAATTAACCGCATGGATACATCCTTTTTATGTTTTCCCGTTTAATTTGCATCAGGCAA 32193 | | | | ||| | ||||| || |||| ||||||| ||| ||| ||| Sbjct 827 ACGTACTTTGCTCATTGCCTGTGCCTTTGTA-CATTTCGCGTTTAAGTTGTTTCATACAA 769 Query 32194 AAATCGACGCGGTTCTCACTCCAGAT 32219 ||||| ||| | || ||||| || Sbjct 768 AAATCAGAGCGTCTTTCGCTCCAAAT 743 >seq13007 Length=9541 Score = 114 bits (126), Expect = 3e-21 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 25778 GTGCCAGATTAGTGACATCGTTTGCCAACGCCTCGTCAATTTTCTTGGCATGCTCAGTCA 25837 |||||| ||| ||| |||||| || || |||||| || ||| | ||||| ||||| | Sbjct 9346 GTGCCATATTTGTGTCATCGTGTGACATTAGCTCGTCGATCTTCATTGCATGTTCAGTTA 9405 Query 25838 GGTGGCTGGGCGAAAGGTGTGCGTAACGACGTACCATTTCGATAGATTCCCAGCCGCCCA 25897 | || | |||| | || || || | | |||||||| || |||||||| || |||| Sbjct 9406 GATGATTCGGCGCTAAATGAGCATACCTTCTCACCATTTCTATTGATTCCCATCCTCCCA 9465 Query 25898 TTTCCTGCAAAACAGAGAGTGGAACACCTGATTGTATCAGCCAACTTGCCCAAGTATGTC 25957 |||| || | |||| | |||||| || || || | |||||||| ||||||||||| | Sbjct 9466 TTTCTTGAAGTGCAGATAATGGAACTCCGGACTGAACAAGCCAACTCGCCCAAGTATGCC 9525 Query 25958 TAAGATCATGAAAACG 25973 | | |||||||| || Sbjct 9526 TCAAGTCATGAAATCG 9541 >seq12086 Length=38917 Score = 105 bits (116), Expect = 2e-18 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 29212 TTCCAGTTCTTTCCAACGATCAACCAGGCAAGCCGTAAATTCAGGGCAAAGTTGAGCAAC 29271 ||| ||||||||||| || ||||| || | ||| ||||||||||| | | ||||||||| Sbjct 1593 TTCGAGTTCTTTCCAGCGGTCAACTAGTCGAGCTGTAAATTCAGGCGATAATTGAGCAAC 1652 Query 29272 AACAATAATGCTGTCACGTTTACCTTGTTCACCTTCAAAAATAAA 29316 |||||||||||||| || ||||||| ||||||| |||||||| Sbjct 1653 TACAATAATGCTGTCGCGCTTACCTTCTTCACCT--GAAAATAAA 1695 >seq28844 Length=1855 Score = 95.1 bits (104), Expect = 3e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27856 GCAATTTGTAAGGTTTTTATTGTTTTGGCCGCGGCATTTAACGCTTCAATAGCGCTATCG 27915 || ||||| || ||||| |||||| || || || |||| |||||||| | | Sbjct 213 GCGATTTGCAAACATTTTACTGTTTTAGCTGCCGCGTTTAGGGCTTCAATTCCTTCGTGT 154 Query 27916 CCCAATTCAAGAAACAGTTCTTTTTCCATCGCCTGATAGTGCGCTCGCGCTTTTGCAGGT 27975 | | |||||||||| |||||||||||| | ||||| || ||| ||||| | || Sbjct 153 TCTAGCTCAAGAAACATTTCTTTTTCCATTTCTTGATATTGTTTTCGGGCTTTGGTGGGG 94 Query 27976 AGCGTAACGTTGATAACGTTGTGTATCGGTTCTTCGATATCAAACCAGTCGGCCGCATTA 28035 || || || || | ||||| || || ||||| ||||| ||||| || || |||| | Sbjct 93 AGTTCAAGTTTAATGATATTGTGGATAGGCTCTTCAATATCGAACCAATCAGCGGCATCA 34 Query 28036 AGGGATAAGGTGACATC 28052 ||||| | |||||||| Sbjct 33 AGGGAGATAGTGACATC 17 >seq22958 Length=1552 Score = 87.8 bits (96), Expect = 5e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34604 CCAAATGCAGAAGCGATATGTTGTAGCAGAGCATCGCGTTGGGTTGCGTTTTGTACGGCA 34663 ||||| || | | ||||||||||||||||||||| || || ||||| |||||| || Sbjct 848 CCAAAAGCGGCTGAGATATGTTGTAGCAGAGCATCACGCTGTGTTGCCACTTGTACTTCA 789 Query 34664 TTATCCGTTAATTGCTGGGTAACAGTTGATAGCCGCTTTTGCTCGTTTTCAACGGC 34719 ||||| ||||| | ||||| | ||| || |||||||| || |||||||||| Sbjct 788 TTATCGGTTAACTTTTGGGTTAATTTTGCTAAGCGCTTTTGTTCAATTTCAACGGC 733 >seq6436 Length=1597 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 28138 AACCAGCGAGACGTAAACGCATTATGGGTTCTGCCTAAGCGCTCGCCCTGGTCAACAAAC 28197 ||||||||||| ||||| || ||| |||||||||||| || | || || ||||||||| Sbjct 147 AACCAGCGAGAAGTAAATGCGCTATAGGTTCTGCCTAATCGTTGACCTTGATCAACAAAC 88 Query 28198 CACGCTTGCCCCC 28210 ||||||||||||| Sbjct 87 CACGCTTGCCCCC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127402603192668