Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Themira_20minor_20[genbank_20GCA_5F001014575.1_202015-05-28] 33,166 sequences; 99,885,510 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq31959 120 3e-22 seq3053 104 2e-17 seq7146 84.2 2e-11 >seq31959 Length=2257 Score = 120 bits (132), Expect = 3e-22 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 50654 GCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTG 50713 || || ||||||||||| ||||||| ||||| || || || |||| |||||||| | Sbjct 786 GCCTCGATGTTGCCCAGGTCGCCGAGATGGCGCTCCTCGTCGGTGGGGGCGCCGTGCTCC 845 Query 50714 CGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAAT 50773 ||||| ||| || ||||| |||||| || ||||||||||| | |||||||||| Sbjct 846 TTGCCCAGCGGGTTGAAGTGGGGGCCGGCGGAGATGCAGCCGTTGGTGTTGTCGCCGAAC 905 Query 50774 TCGTGCACGTGGAACCCGTGAAAGCCCTTTG 50804 |||||||| ||||| ||||| ||||||||| Sbjct 906 TCGTGCACATGGAAGCCGTG-CAGCCCTTTG 935 >seq3053 Length=25279 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | |||| ||||| || ||||| |||||||| || |||||| Sbjct 10192 GCACCACCACGAAGACGAAGAACCAGATGTAATGTTGACTCCTTTTGAATGTTATAATCG 10133 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| |||| || |||||||| | || | || || ||||| ||| Sbjct 10132 GACAATGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATTAGACGTTGTTGATCTGGA 10073 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||| |||||| ||| | | |||| | | |||| ||||||| | || Sbjct 10072 GGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTCTCGATTGTGTCCGAAGGTTC 10014 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | ||| | || || || || || ||||||||||| |||||||| Sbjct 10013 GACCTCTAAGGTGATGGTCTTCCCCGTGAGGGTTTTTACAAAGATCTGCAT 9963 >seq7146 Length=6253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 || || |||||| |||||||||| | |||||||||||||| || || |||| || | Sbjct 5610 ATTGCGTTCGCCGCCGTCGAGGGCATTTTCTTCTCGGGCAGTTTCGCCTCGATCTTCTGG 5669 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 |||| | || | |||||||||||||| || ||||||| | ||||| | ||| Sbjct 5670 CTGAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGTTGATCTCACGCGAC 5729 Query 47265 GAAGGCCTGCA 47275 || |||||||| Sbjct 5730 GAGGGCCTGCA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475303669255840